Strain Fitness in Pseudomonas putida KT2440 around PP_4132

Experiment: P. put South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put South MOI 1
4,670,371	+		PP_4131	0.48	-0.7
4,670,372	-		PP_4131	0.48	+0.6
4,670,429	+		PP_4131	0.52	+0.1
4,670,430	-		PP_4131	0.52	+0.1
4,670,430	-		PP_4131	0.52	-2.2
4,670,445	-		PP_4131	0.53	+1.6
4,670,495	+		PP_4131	0.56	+1.5
4,670,495	+		PP_4131	0.56	+1.7
4,670,496	-		PP_4131	0.56	+1.2
4,670,496	-		PP_4131	0.56	+0.5
4,670,496	-		PP_4131	0.56	+1.0
4,670,578	+		PP_4131	0.62	+1.1
4,670,579	-		PP_4131	0.62	+1.3
4,670,671	+		PP_4131	0.68	+1.1
4,670,671	+		PP_4131	0.68	+2.0
4,670,799	-		PP_4131	0.77	-0.3
4,670,863	+		PP_4131	0.81	-1.1
4,670,863	+		PP_4131	0.81	+0.9
4,670,864	-		PP_4131	0.81	-0.4
4,670,864	-		PP_4131	0.81	-0.5
4,670,941	+		PP_4131	0.87	+0.5
4,670,941	+		PP_4131	0.87	+4.2
4,670,941	+				+2.5
4,670,941	+		PP_4131	0.87	+2.4
4,670,945	-		PP_4131	0.87	+1.6
4,670,945	-		PP_4131	0.87	-0.3
4,670,948	-		PP_4131	0.87	+1.5
4,670,964	+		PP_4131	0.88	-0.1
4,671,210	-				-1.7
4,671,302	+		PP_4132	0.28	-0.8
4,671,303	-		PP_4132	0.28	-1.9
4,671,402	-		PP_4132	0.66	+1.0
4,671,438	+		PP_4132	0.79	-3.2
4,671,438	+		PP_4132	0.79	-1.2
4,671,439	-		PP_4132	0.80	+0.5
4,671,439	-		PP_4132	0.80	+1.7
4,671,442	+		PP_4132	0.81	-0.0
4,671,442	+		PP_4132	0.81	-2.3
4,671,442	+		PP_4132	0.81	-2.1
4,671,442	+		PP_4132	0.81	-3.4
4,671,442	+		PP_4132	0.81	-2.7
4,671,442	+		PP_4132	0.81	-2.1
4,671,443	-		PP_4132	0.81	-0.8
4,671,443	-		PP_4132	0.81	+0.5
4,671,443	-		PP_4132	0.81	-1.4
4,671,443	-		PP_4132	0.81	-0.8
4,671,443	-		PP_4132	0.81	+0.6
4,671,482	+				-3.8
4,671,482	+				+0.1
4,671,482	+				-2.9
4,671,482	+				-0.1
4,671,482	+				-2.8
4,671,483	-				+1.7
4,671,483	-				+0.0
4,671,483	-				-0.5
4,671,486	+				-5.3
4,671,487	-				-1.4
4,671,499	+				-3.1
4,671,499	+				-2.8
4,671,499	+				-2.2
4,671,506	+				-2.4
4,671,506	+				-2.8
4,671,506	+				-3.0
4,671,506	+				-3.0
4,671,506	+				+0.6
4,671,507	-				-0.0
4,671,507	-				+0.2
4,671,507	-				+3.0
4,671,507	-				+1.0
4,671,557	+				-3.9
4,671,558	-				-0.2
4,671,558	-				+0.8
4,671,558	-				-1.0
4,671,558	-				+0.7
4,671,649	+				-4.1
4,671,649	+				-3.8
4,671,649	+				-3.3
4,671,649	+				-4.7
4,671,649	+				-2.9
4,671,649	+				-4.4
4,671,649	+				-3.1
4,671,649	+				-5.4
4,671,649	+				-5.5
4,671,649	+				-3.3
4,671,649	+				-3.8
4,671,649	+				-3.6
4,671,649	+				-3.8
4,671,649	+				-4.8
4,671,664	+				-0.1
4,671,677	+				-0.6
4,671,823	+		PP_4133	0.40	+0.1
4,671,862	+		PP_4133	0.50	-1.0
4,672,093	+		PP_4134	0.13	+1.0
4,672,232	+		PP_4134	0.51	+0.5
4,672,457	+		PP_4135	0.16	+1.1
4,672,459	+		PP_4135	0.17	-0.2
4,672,459	+		PP_4135	0.17	+0.3
4,672,459	+		PP_4135	0.17	-0.3
4,672,459	+		PP_4135	0.17	-1.3
4,672,459	+		PP_4135	0.17	-0.3
4,672,459	+		PP_4135	0.17	+0.4
4,672,489	+		PP_4135	0.25	-0.2
4,672,489	+		PP_4135	0.25	-1.2
4,672,489	+		PP_4135	0.25	+0.5
4,672,489	+		PP_4135	0.25	+0.0
4,672,489	+		PP_4135	0.25	-0.4