Strain Fitness in Pseudomonas putida KT2440 around PP_3907

Experiment: P. put South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put South MOI 1
4,417,001	-		PP_3904	0.61	-1.7
4,417,078	+				+1.1
4,417,094	+				+4.6
4,417,095	-				+1.6
4,417,113	+				+2.4
4,417,134	+				+2.1
4,417,134	+				+0.4
4,417,134	+				+1.7
4,417,134	+				+2.7
4,417,135	-				-0.0
4,417,358	+		PP_3905	0.45	-0.5
4,417,648	+				+1.6
4,417,649	-				-1.0
4,417,877	+		PP_3906	0.73	+0.5
4,417,878	-		PP_3906	0.74	+0.1
4,417,878	-		PP_3906	0.74	+0.2
4,417,878	-		PP_3906	0.74	-0.1
4,418,093	+		PP_3907	0.32	+0.9
4,418,093	+		PP_3907	0.32	+0.5
4,418,093	+		PP_3907	0.32	+1.0
4,418,094	-		PP_3907	0.32	+0.7
4,418,094	-		PP_3907	0.32	-0.5
4,418,143	+		PP_3907	0.43	+1.6
4,418,143	+		PP_3907	0.43	+1.2
4,418,143	+		PP_3907	0.43	-0.1
4,418,143	+		PP_3907	0.43	+1.5
4,418,144	-		PP_3907	0.43	+0.7
4,418,183	-		PP_3907	0.52	+0.1
4,418,219	-		PP_3907	0.60	-0.6
4,418,219	-		PP_3907	0.60	+0.4
4,418,219	-		PP_3907	0.60	-0.7
4,418,257	+		PP_3907	0.68	+1.1
4,418,257	+		PP_3907	0.68	+2.4
4,418,257	+		PP_3907	0.68	+0.5
4,418,258	-		PP_3907	0.68	+0.5
4,418,259	+		PP_3907	0.68	-0.2
4,418,322	+		PP_3907	0.82	-0.1
4,418,477	+				-0.3
4,418,718	+		PP_3908	0.66	+0.4
4,418,719	-		PP_3908	0.67	-0.6
4,418,743	+		PP_3908	0.74	-0.4
4,418,797	-		PP_3908	0.89	+1.2
4,418,797	-		PP_3908	0.89	+0.1
4,418,819	+				-0.5
4,418,851	-				+0.2
4,418,903	+		PP_3909	0.19	+0.4
4,418,903	+		PP_3909	0.19	+0.9
4,418,904	-		PP_3909	0.20	+0.6
4,418,904	-		PP_3909	0.20	-0.0
4,418,904	-		PP_3909	0.20	+0.2
4,419,015	+		PP_3909	0.59	-0.4
4,419,015	+		PP_3909	0.59	-1.2
4,419,016	-		PP_3909	0.60	+1.4
4,419,069	+		PP_3909	0.79	-1.1
4,419,070	-		PP_3909	0.79	+1.2
4,419,085	-		PP_3909	0.85	+0.0
4,419,185	-				-2.0
4,419,240	+				+0.3
4,419,240	+				-0.2
4,419,241	-				-0.8
4,419,247	-				-0.6
4,419,366	+		PP_3910	0.24	-1.1
4,419,366	+		PP_3910	0.24	-1.5
4,419,366	+		PP_3910	0.24	+0.5
4,419,366	+		PP_3910	0.24	-0.2
4,419,367	-		PP_3910	0.24	-0.6
4,419,367	-		PP_3910	0.24	+0.3
4,419,384	+		PP_3910	0.27	-0.4
4,419,385	-		PP_3910	0.27	+0.4
4,419,385	-		PP_3910	0.27	-0.8