Strain Fitness in Pseudomonas putida KT2440 around PP_3151

Experiment: P. put South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put South MOI 1
3,568,549	-		PP_3150	0.55	-0.3
3,568,549	-		PP_3150	0.55	+0.5
3,568,549	-		PP_3150	0.55	-0.1
3,568,549	-		PP_3150	0.55	+0.6
3,568,683	-		PP_3150	0.62	-0.1
3,568,864	-		PP_3150	0.71	+0.6
3,569,052	+		PP_3150	0.80	+0.9
3,569,169	+		PP_3150	0.86	-0.3
3,569,343	-				+0.9
3,569,343	-				+0.7
3,569,359	-				-1.7
3,569,359	-				+1.0
3,569,359	-				+0.6
3,569,664	-		PP_3151	0.13	-0.1
3,569,675	+		PP_3151	0.14	-1.7
3,569,675	+		PP_3151	0.14	+0.3
3,569,676	-		PP_3151	0.14	+0.9
3,569,676	-		PP_3151	0.14	-0.8
3,569,676	-		PP_3151	0.14	+0.2
3,569,676	-		PP_3151	0.14	-0.2
3,569,676	-		PP_3151	0.14	+1.1
3,569,950	-		PP_3151	0.34	-0.8
3,569,951	+		PP_3151	0.34	+0.4
3,569,951	+		PP_3151	0.34	-1.9
3,569,951	+		PP_3151	0.34	+0.1
3,569,951	+		PP_3151	0.34	-0.8
3,569,951	+		PP_3151	0.34	-0.2
3,569,951	+		PP_3151	0.34	+0.4
3,569,951	+		PP_3151	0.34	+0.5
3,569,951	+		PP_3151	0.34	+0.6
3,569,951	+		PP_3151	0.34	-0.3
3,569,952	-		PP_3151	0.34	+0.4
3,569,952	-		PP_3151	0.34	+1.2
3,569,952	-		PP_3151	0.34	+0.7
3,569,952	-		PP_3151	0.34	-0.4
3,570,087	-		PP_3151	0.44	-0.1
3,570,359	+		PP_3151	0.63	+0.1
3,570,374	-		PP_3151	0.65	+0.2
3,570,398	+		PP_3151	0.66	-0.6
3,570,399	-		PP_3151	0.66	+1.0
3,570,399	-		PP_3151	0.66	-0.7
3,570,580	+		PP_3151	0.79	+0.4
3,570,580	+		PP_3151	0.79	-0.0
3,570,581	-		PP_3151	0.80	-0.1
3,570,581	-		PP_3151	0.80	+0.3
3,570,696	-		PP_3151	0.88	-0.3
3,570,794	+				+0.4
3,570,905	+				-0.3
3,570,906	-				+0.3
3,570,906	-				+0.0
3,570,906	-				+0.3
3,570,935	+				+0.2
3,571,106	-		PP_3152	0.15	+1.1
3,571,106	-		PP_3152	0.15	+1.6
3,571,302	+		PP_3152	0.38	-0.1
3,571,303	-		PP_3152	0.38	-0.1
3,571,303	-		PP_3152	0.38	-0.4
3,571,438	+		PP_3152	0.54	+0.6
3,571,439	-		PP_3152	0.54	+0.3
3,571,484	+		PP_3152	0.59	-0.2
3,571,485	-		PP_3152	0.59	+0.1
3,571,485	-		PP_3152	0.59	+1.1
3,571,485	-		PP_3152	0.59	-1.1
3,571,485	-		PP_3152	0.59	-0.3
3,571,485	-		PP_3152	0.59	+0.1
3,571,527	+		PP_3152	0.64	-1.5
3,571,528	-		PP_3152	0.64	+0.6
3,571,528	-		PP_3152	0.64	+0.1
3,571,624	-		PP_3152	0.75	-0.3
3,571,747	-		PP_3152	0.89	-0.9
3,571,765	+				+0.4
3,571,778	+				+0.2
3,571,779	-				+0.4
3,571,779	-				+0.3