Strain Fitness in Pseudomonas putida KT2440 around PP_2315

Experiment: P. put South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put South MOI 1
2,643,268	+				+0.4
2,643,269	-				-0.7
2,643,454	-		PP_2313	0.45	-0.2
2,643,547	-		PP_2313	0.66	+0.6
2,643,714	+				-0.3
2,643,714	+				-0.0
2,643,715	-				+0.4
2,643,715	-				-2.3
2,643,715	-				+0.4
2,643,742	-				+0.6
2,643,796	+				-1.4
2,643,796	+				-1.1
2,643,796	+				-0.2
2,643,797	-				+0.5
2,643,797	-				+1.1
2,643,819	-				+0.4
2,643,826	+				-1.0
2,643,827	-				+0.3
2,643,957	+				+0.5
2,643,958	-				+0.1
2,643,958	-				+0.3
2,643,958	-				+1.0
2,643,958	-				+1.4
2,643,958	-				-0.7
2,643,958	-				+1.1
2,643,958	-				+1.4
2,644,239	+				-0.4
2,644,240	-				-0.4
2,644,274	+				-0.1
2,644,274	+				+0.9
2,644,275	-				-0.5
2,644,275	-				-0.6
2,644,335	+		PP_2315	0.15	+0.7
2,644,335	+		PP_2315	0.15	+0.9
2,644,336	-		PP_2315	0.15	+1.0
2,644,336	-		PP_2315	0.15	+1.2
2,644,404	+		PP_2315	0.29	+1.6
2,644,405	-		PP_2315	0.29	+1.0
2,644,410	+		PP_2315	0.30	-0.0
2,644,410	+		PP_2315	0.30	+0.0
2,644,410	+		PP_2315	0.30	-0.3
2,644,411	-		PP_2315	0.30	+0.1
2,644,411	-		PP_2315	0.30	+0.3
2,644,411	-		PP_2315	0.30	+0.9
2,644,411	-		PP_2315	0.30	+0.9
2,644,453	-		PP_2315	0.39	+1.2
2,644,453	-		PP_2315	0.39	+1.8
2,644,611	+		PP_2315	0.71	+0.2
2,644,612	-		PP_2315	0.71	-0.6
2,644,612	-				-0.1
2,644,612	-		PP_2315	0.71	+1.5
2,644,682	+		PP_2315	0.86	+1.2
2,644,682	+		PP_2315	0.86	+0.7
2,644,682	+		PP_2315	0.86	+0.1
2,644,682	+		PP_2315	0.86	+0.9
2,644,682	+		PP_2315	0.86	+1.8
2,644,682	+		PP_2315	0.86	+0.4
2,644,682	+		PP_2315	0.86	+0.1
2,644,682	+		PP_2315	0.86	+0.4
2,644,682	+		PP_2315	0.86	+1.2
2,644,683	-		PP_2315	0.86	-0.0
2,644,683	-		PP_2315	0.86	+0.9
2,644,683	-		PP_2315	0.86	+0.3
2,644,683	-		PP_2315	0.86	-0.8
2,644,683	-		PP_2315	0.86	-0.9
2,644,683	-		PP_2315	0.86	+1.0
2,644,683	-		PP_2315	0.86	-0.9
2,644,683	-		PP_2315	0.86	-0.9
2,644,683	-				+0.4
2,644,689	-		PP_2315	0.87	-0.4
2,644,708	-				+0.4
2,644,708	-				-0.3
2,644,708	-				+0.1
2,644,708	-				+0.5
2,644,708	-				+0.1
2,644,977	-				-1.2
2,644,977	-				-2.8
2,645,179	+		PP_2316	0.15	-0.1
2,645,179	+		PP_2316	0.15	-0.5
2,645,179	+		PP_2316	0.15	+1.4
2,645,180	-		PP_2316	0.15	+0.4
2,645,180	-		PP_2316	0.15	-0.5
2,645,180	-		PP_2316	0.15	-0.8
2,645,197	-		PP_2316	0.15	-1.3
2,645,326	+		PP_2316	0.20	-1.0
2,645,326	+		PP_2316	0.20	-0.4
2,645,326	+		PP_2316	0.20	+0.0
2,645,327	-		PP_2316	0.20	+0.3
2,645,371	+				+3.4
2,645,371	+		PP_2316	0.22	-0.5
2,645,523	-		PP_2316	0.28	-3.1