Strain Fitness in Pseudomonas putida KT2440 around PP_0594

Experiment: P. put South MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0592 and PP_0593 are separated by 368 nucleotidesPP_0593 and PP_0594 are separated by 9 nucleotidesPP_0594 and PP_0595 are separated by 9 nucleotides PP_0592: PP_0592 - Oxidoreductase, short chain dehydrogenase/reductase family, at 690,722 to 691,408 _0592 PP_0593: PP_0593 - putative ribosome-binding factor, at 691,777 to 692,361 _0593 PP_0594: PP_0594 - Transcriptional regulator, TetR family, at 692,371 to 693,114 _0594 PP_0595: PP_0595 - Transcriptional regulator, LysR family, at 693,124 to 694,041 _0595 Position (kb) 692 693 694Strain fitness (log2 ratio) -2 -1 0 1 2 3at 691.402 kb on + strandat 691.450 kb on + strandat 691.450 kb on + strandat 691.450 kb on + strandat 691.450 kb on + strandat 691.450 kb on + strandat 691.450 kb on + strandat 691.451 kb on - strandat 691.451 kb on - strandat 691.451 kb on - strandat 691.451 kb on - strandat 691.451 kb on - strandat 691.465 kb on - strandat 691.465 kb on - strandat 691.575 kb on + strandat 691.575 kb on + strandat 691.576 kb on - strandat 691.576 kb on - strandat 691.576 kb on - strandat 691.576 kb on - strandat 691.631 kb on + strandat 691.631 kb on + strandat 691.632 kb on - strandat 691.654 kb on + strandat 691.682 kb on + strandat 691.714 kb on + strandat 691.740 kb on + strandat 691.797 kb on + strandat 691.798 kb on - strandat 691.798 kb on - strandat 691.798 kb on - strandat 691.798 kb on - strandat 692.039 kb on + strand, within PP_0593at 692.331 kb on - strandat 692.352 kb on + strandat 692.352 kb on + strandat 692.352 kb on + strandat 692.353 kb on - strandat 692.353 kb on - strandat 692.361 kb on + strandat 692.361 kb on + strandat 692.362 kb on - strandat 692.362 kb on - strandat 692.362 kb on - strandat 692.415 kb on + strandat 692.415 kb on + strandat 692.416 kb on - strandat 692.502 kb on - strand, within PP_0594at 692.540 kb on - strand, within PP_0594at 692.540 kb on - strand, within PP_0594at 692.587 kb on + strand, within PP_0594at 692.633 kb on + strand, within PP_0594at 692.633 kb on + strand, within PP_0594at 692.633 kb on + strand, within PP_0594at 692.729 kb on + strand, within PP_0594at 692.729 kb on + strand, within PP_0594at 692.730 kb on - strand, within PP_0594at 692.730 kb on - strand, within PP_0594at 692.822 kb on + strand, within PP_0594at 692.822 kb on + strand, within PP_0594at 692.822 kb on + strand, within PP_0594at 692.823 kb on - strand, within PP_0594at 692.823 kb on - strand, within PP_0594at 692.823 kb on - strand, within PP_0594at 692.847 kb on - strand, within PP_0594at 692.847 kb on - strand, within PP_0594at 692.847 kb on - strand, within PP_0594at 692.849 kb on + strand, within PP_0594at 692.849 kb on + strand, within PP_0594at 692.850 kb on - strand, within PP_0594at 692.850 kb on - strand, within PP_0594at 692.850 kb on - strand, within PP_0594at 692.850 kb on - strand, within PP_0594at 692.859 kb on + strand, within PP_0594at 692.860 kb on - strand, within PP_0594at 692.931 kb on - strand, within PP_0594at 692.950 kb on - strand, within PP_0594at 692.976 kb on + strand, within PP_0594at 693.025 kb on + strand, within PP_0594at 693.026 kb on - strand, within PP_0594at 693.026 kb on - strand, within PP_0594at 693.026 kb on - strand, within PP_0594at 693.027 kb on - strand, within PP_0594at 693.078 kb on + strandat 693.079 kb on - strandat 693.276 kb on - strand, within PP_0595at 693.276 kb on - strand, within PP_0595at 693.291 kb on - strand, within PP_0595at 693.291 kb on - strand, within PP_0595at 693.297 kb on + strand, within PP_0595at 693.297 kb on + strand, within PP_0595at 693.297 kb on + strand, within PP_0595at 693.298 kb on - strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.300 kb on - strand, within PP_0595at 693.309 kb on + strand, within PP_0595at 693.371 kb on + strand, within PP_0595at 693.372 kb on - strand, within PP_0595at 693.372 kb on - strand, within PP_0595at 693.464 kb on + strand, within PP_0595at 693.525 kb on - strand, within PP_0595at 693.678 kb on + strand, within PP_0595at 693.679 kb on - strand, within PP_0595at 693.679 kb on - strand, within PP_0595at 693.809 kb on + strand, within PP_0595at 693.810 kb on - strand, within PP_0595at 693.810 kb on - strand, within PP_0595at 693.931 kb on + strand, within PP_0595at 693.978 kb on - strandat 693.978 kb on - strandat 694.042 kb on + strandat 694.042 kb on + strandat 694.043 kb on - strandat 694.043 kb on - strandat 694.070 kb on - strandat 694.094 kb on + strandat 694.111 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. put South MOI 1
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691,402 + +0.9
691,450 + +0.6
691,450 + -0.5
691,450 + -0.7
691,450 + +0.4
691,450 + +0.2
691,450 + +0.2
691,451 - -0.2
691,451 - +2.3
691,451 - +0.4
691,451 - +1.0
691,451 - +0.1
691,465 - +0.4
691,465 - -0.9
691,575 + +0.3
691,575 + -1.1
691,576 - +1.0
691,576 - +1.1
691,576 - +0.4
691,576 - +0.1
691,631 + -0.0
691,631 + -0.1
691,632 - +0.7
691,654 + +1.1
691,682 + +0.5
691,714 + -2.0
691,740 + -0.1
691,797 + +0.3
691,798 - -0.9
691,798 - -0.2
691,798 - -0.3
691,798 - -0.3
692,039 + PP_0593 0.45 +0.9
692,331 - -0.5
692,352 + +0.1
692,352 + +0.2
692,352 + +0.3
692,353 - -1.1
692,353 - +0.3
692,361 + -0.2
692,361 + +0.1
692,362 - -0.1
692,362 - +0.7
692,362 - +0.1
692,415 + +0.2
692,415 + +0.4
692,416 - +1.3
692,502 - PP_0594 0.18 +1.0
692,540 - PP_0594 0.23 +0.9
692,540 - PP_0594 0.23 +0.8
692,587 + PP_0594 0.29 -2.6
692,633 + PP_0594 0.35 +1.4
692,633 + PP_0594 0.35 +0.4
692,633 + PP_0594 0.35 +0.7
692,729 + PP_0594 0.48 +0.6
692,729 + PP_0594 0.48 +1.2
692,730 - PP_0594 0.48 +0.3
692,730 - PP_0594 0.48 +1.0
692,822 + PP_0594 0.61 +1.0
692,822 + PP_0594 0.61 -0.9
692,822 + PP_0594 0.61 +0.4
692,823 - PP_0594 0.61 +1.2
692,823 - PP_0594 0.61 +1.8
692,823 - PP_0594 0.61 +0.4
692,847 - PP_0594 0.64 -0.4
692,847 - PP_0594 0.64 +2.0
692,847 - PP_0594 0.64 +0.9
692,849 + PP_0594 0.64 +0.8
692,849 + PP_0594 0.64 +0.8
692,850 - PP_0594 0.64 +0.1
692,850 - PP_0594 0.64 +0.8
692,850 - PP_0594 0.64 +0.7
692,850 - PP_0594 0.64 +1.4
692,859 + PP_0594 0.66 +0.3
692,860 - PP_0594 0.66 +0.0
692,931 - PP_0594 0.75 +1.0
692,950 - PP_0594 0.78 +0.6
692,976 + PP_0594 0.81 +0.7
693,025 + PP_0594 0.88 +0.3
693,026 - PP_0594 0.88 +0.9
693,026 - PP_0594 0.88 +0.5
693,026 - PP_0594 0.88 -0.5
693,027 - PP_0594 0.88 +0.6
693,078 + -2.3
693,079 - +0.7
693,276 - PP_0595 0.17 +3.0
693,276 - PP_0595 0.17 +1.1
693,291 - PP_0595 0.18 +0.2
693,291 - PP_0595 0.18 -0.0
693,297 + PP_0595 0.19 -0.1
693,297 + PP_0595 0.19 -0.0
693,297 + PP_0595 0.19 -0.0
693,298 - PP_0595 0.19 +0.5
693,299 + PP_0595 0.19 -0.3
693,299 + PP_0595 0.19 -0.1
693,299 + PP_0595 0.19 +0.3
693,299 + PP_0595 0.19 +1.1
693,299 + PP_0595 0.19 -0.9
693,299 + PP_0595 0.19 -1.7
693,300 - PP_0595 0.19 -0.1
693,309 + PP_0595 0.20 +0.9
693,371 + PP_0595 0.27 +0.1
693,372 - PP_0595 0.27 -2.0
693,372 - PP_0595 0.27 -0.7
693,464 + PP_0595 0.37 -0.2
693,525 - PP_0595 0.44 -0.6
693,678 + PP_0595 0.60 +0.2
693,679 - PP_0595 0.60 +0.9
693,679 - PP_0595 0.60 +0.0
693,809 + PP_0595 0.75 -0.6
693,810 - PP_0595 0.75 +0.9
693,810 - PP_0595 0.75 -0.1
693,931 + PP_0595 0.88 -1.9
693,978 - +0.7
693,978 - -0.6
694,042 + +0.4
694,042 + +0.1
694,043 - +0.2
694,043 - +1.1
694,070 - +0.5
694,094 + -0.3
694,111 - +0.0

Or see this region's nucleotide sequence