Strain Fitness in Pseudomonas putida KT2440 around PP_0498

Experiment: P. put South MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0496 and PP_0497 are separated by 178 nucleotidesPP_0497 and PP_0498 are separated by 11 nucleotides PP_0496: PP_0496 - Sodium/alanine symporter, at 585,328 to 586,770 _0496 PP_0497: PP_0497 - Transcriptional regulator, Cro/CI family, at 586,949 to 587,758 _0497 PP_0498: PP_0498 - conserved protein of unknown function, at 587,770 to 588,645 _0498 Position (kb) 587 588 589Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 586.857 kb on + strandat 586.948 kb on + strandat 586.948 kb on + strandat 586.949 kb on - strandat 586.949 kb on - strandat 587.003 kb on - strandat 587.054 kb on + strand, within PP_0497at 587.054 kb on + strand, within PP_0497at 587.055 kb on - strand, within PP_0497at 587.055 kb on - strandat 587.055 kb on - strand, within PP_0497at 587.055 kb on - strand, within PP_0497at 587.099 kb on - strand, within PP_0497at 587.261 kb on + strand, within PP_0497at 587.274 kb on - strand, within PP_0497at 587.282 kb on + strand, within PP_0497at 587.282 kb on + strand, within PP_0497at 587.416 kb on - strand, within PP_0497at 587.569 kb on - strand, within PP_0497at 587.619 kb on - strand, within PP_0497at 587.691 kb on + strandat 587.692 kb on - strandat 587.692 kb on - strandat 587.756 kb on + strandat 587.756 kb on + strandat 587.756 kb on + strandat 587.762 kb on + strandat 587.763 kb on - strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.832 kb on + strandat 587.925 kb on + strand, within PP_0498at 587.948 kb on + strand, within PP_0498at 587.949 kb on - strand, within PP_0498at 587.949 kb on - strand, within PP_0498at 587.949 kb on - strand, within PP_0498at 588.030 kb on - strand, within PP_0498at 588.047 kb on - strand, within PP_0498at 588.047 kb on - strand, within PP_0498at 588.049 kb on + strand, within PP_0498at 588.049 kb on + strand, within PP_0498at 588.049 kb on + strand, within PP_0498at 588.050 kb on - strand, within PP_0498at 588.050 kb on - strand, within PP_0498at 588.050 kb on - strand, within PP_0498at 588.078 kb on + strand, within PP_0498at 588.078 kb on + strand, within PP_0498at 588.078 kb on + strand, within PP_0498at 588.078 kb on + strand, within PP_0498at 588.078 kb on + strand, within PP_0498at 588.078 kb on + strand, within PP_0498at 588.079 kb on - strand, within PP_0498at 588.079 kb on - strand, within PP_0498at 588.079 kb on - strand, within PP_0498at 588.080 kb on + strand, within PP_0498at 588.080 kb on + strand, within PP_0498at 588.080 kb on + strand, within PP_0498at 588.080 kb on + strand, within PP_0498at 588.080 kb on + strand, within PP_0498at 588.080 kb on + strand, within PP_0498at 588.080 kb on + strand, within PP_0498at 588.081 kb on - strand, within PP_0498at 588.081 kb on - strand, within PP_0498at 588.081 kb on - strand, within PP_0498at 588.081 kb on - strand, within PP_0498at 588.081 kb on - strand, within PP_0498at 588.084 kb on + strand, within PP_0498at 588.084 kb on + strand, within PP_0498at 588.084 kb on + strand, within PP_0498at 588.085 kb on - strand, within PP_0498at 588.085 kb on - strand, within PP_0498at 588.085 kb on - strand, within PP_0498at 588.085 kb on - strand, within PP_0498at 588.085 kb on - strand, within PP_0498at 588.085 kb on - strand, within PP_0498at 588.187 kb on + strand, within PP_0498at 588.187 kb on + strand, within PP_0498at 588.188 kb on - strand, within PP_0498at 588.225 kb on + strand, within PP_0498at 588.225 kb on + strand, within PP_0498at 588.226 kb on - strand, within PP_0498at 588.226 kb on - strand, within PP_0498at 588.226 kb on - strand, within PP_0498at 588.231 kb on + strand, within PP_0498at 588.231 kb on + strand, within PP_0498at 588.232 kb on - strand, within PP_0498at 588.232 kb on - strand, within PP_0498at 588.232 kb on - strand, within PP_0498at 588.232 kb on - strand, within PP_0498at 588.232 kb on - strand, within PP_0498at 588.250 kb on - strand, within PP_0498at 588.257 kb on - strand, within PP_0498at 588.413 kb on + strand, within PP_0498at 588.487 kb on - strand, within PP_0498at 588.493 kb on + strand, within PP_0498at 588.518 kb on + strand, within PP_0498at 588.518 kb on + strand, within PP_0498at 588.518 kb on + strand, within PP_0498at 588.519 kb on - strand, within PP_0498at 588.625 kb on + strandat 588.625 kb on + strandat 588.970 kb on + strandat 588.971 kb on - strandat 588.971 kb on - strandat 589.005 kb on + strandat 589.006 kb on - strandat 589.006 kb on - strandat 589.018 kb on - strandat 589.130 kb on + strandat 589.274 kb on - strandat 589.289 kb on + strandat 589.290 kb on - strandat 589.300 kb on + strandat 589.300 kb on + strandat 589.322 kb on - strandat 589.342 kb on + strandat 589.342 kb on + strandat 589.441 kb on + strandat 589.490 kb on + strandat 589.490 kb on + strandat 589.491 kb on - strandat 589.491 kb on - strandat 589.492 kb on + strandat 589.492 kb on + strandat 589.509 kb on - strandat 589.509 kb on - strandat 589.516 kb on + strandat 589.517 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. put South MOI 1
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586,857 + +0.1
586,948 + +1.4
586,948 + -0.2
586,949 - +1.2
586,949 - -0.0
587,003 - +0.7
587,054 + PP_0497 0.13 +0.4
587,054 + PP_0497 0.13 +0.9
587,055 - PP_0497 0.13 +0.6
587,055 - +1.6
587,055 - PP_0497 0.13 -2.4
587,055 - PP_0497 0.13 +1.6
587,099 - PP_0497 0.19 -0.1
587,261 + PP_0497 0.39 -0.0
587,274 - PP_0497 0.40 +1.1
587,282 + PP_0497 0.41 -1.0
587,282 + PP_0497 0.41 +0.6
587,416 - PP_0497 0.58 +0.4
587,569 - PP_0497 0.77 +0.4
587,619 - PP_0497 0.83 -0.0
587,691 + +0.6
587,692 - -0.7
587,692 - +1.1
587,756 + -0.9
587,756 + +0.2
587,756 + -0.3
587,762 + +1.1
587,763 - +0.3
587,771 + -0.4
587,771 + -0.1
587,832 + +0.2
587,925 + PP_0498 0.18 +1.6
587,948 + PP_0498 0.20 +0.6
587,949 - PP_0498 0.20 +1.0
587,949 - PP_0498 0.20 -0.9
587,949 - PP_0498 0.20 +0.5
588,030 - PP_0498 0.30 -0.1
588,047 - PP_0498 0.32 +0.4
588,047 - PP_0498 0.32 +1.1
588,049 + PP_0498 0.32 -0.9
588,049 + PP_0498 0.32 -0.1
588,049 + PP_0498 0.32 -0.8
588,050 - PP_0498 0.32 +0.5
588,050 - PP_0498 0.32 -0.6
588,050 - PP_0498 0.32 -0.8
588,078 + PP_0498 0.35 +0.4
588,078 + PP_0498 0.35 +0.7
588,078 + PP_0498 0.35 -0.8
588,078 + PP_0498 0.35 +0.4
588,078 + PP_0498 0.35 +0.6
588,078 + PP_0498 0.35 +0.2
588,079 - PP_0498 0.35 +0.1
588,079 - PP_0498 0.35 +0.8
588,079 - PP_0498 0.35 +0.9
588,080 + PP_0498 0.35 +0.5
588,080 + PP_0498 0.35 -0.2
588,080 + PP_0498 0.35 -0.7
588,080 + PP_0498 0.35 +1.7
588,080 + PP_0498 0.35 +0.1
588,080 + PP_0498 0.35 -1.0
588,080 + PP_0498 0.35 +1.6
588,081 - PP_0498 0.36 +1.6
588,081 - PP_0498 0.36 +0.8
588,081 - PP_0498 0.36 -0.0
588,081 - PP_0498 0.36 +0.2
588,081 - PP_0498 0.36 -0.2
588,084 + PP_0498 0.36 -1.1
588,084 + PP_0498 0.36 +0.8
588,084 + PP_0498 0.36 +0.4
588,085 - PP_0498 0.36 +0.2
588,085 - PP_0498 0.36 +0.5
588,085 - PP_0498 0.36 +0.5
588,085 - PP_0498 0.36 +0.8
588,085 - PP_0498 0.36 +0.7
588,085 - PP_0498 0.36 -0.1
588,187 + PP_0498 0.48 -0.7
588,187 + PP_0498 0.48 +1.9
588,188 - PP_0498 0.48 +0.8
588,225 + PP_0498 0.52 +0.4
588,225 + PP_0498 0.52 +0.4
588,226 - PP_0498 0.52 +0.8
588,226 - PP_0498 0.52 +1.1
588,226 - PP_0498 0.52 +0.8
588,231 + PP_0498 0.53 +0.9
588,231 + PP_0498 0.53 +0.3
588,232 - PP_0498 0.53 +2.1
588,232 - PP_0498 0.53 +0.4
588,232 - PP_0498 0.53 +1.1
588,232 - PP_0498 0.53 +1.2
588,232 - PP_0498 0.53 +0.6
588,250 - PP_0498 0.55 +0.3
588,257 - PP_0498 0.56 -0.6
588,413 + PP_0498 0.73 -0.9
588,487 - PP_0498 0.82 +1.8
588,493 + PP_0498 0.83 +0.8
588,518 + PP_0498 0.85 +0.9
588,518 + PP_0498 0.85 +0.1
588,518 + PP_0498 0.85 -2.2
588,519 - PP_0498 0.86 +0.7
588,625 + -0.0
588,625 + +0.4
588,970 + +0.6
588,971 - +1.1
588,971 - -0.3
589,005 + +0.8
589,006 - +1.6
589,006 - +0.1
589,018 - +1.1
589,130 + +0.5
589,274 - +3.1
589,289 + -0.3
589,290 - +1.6
589,300 + -0.0
589,300 + -0.8
589,322 - +1.0
589,342 + -0.2
589,342 + -0.1
589,441 + -2.4
589,490 + -0.2
589,490 + -3.5
589,491 - +1.1
589,491 - +1.3
589,492 + -0.8
589,492 + -0.8
589,509 - +4.0
589,509 - -0.4
589,516 + -0.7
589,517 - +3.4

Or see this region's nucleotide sequence