Strain Fitness in Pseudomonas putida KT2440 around PP_5421

Experiment: P. put South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put South MOI 1
15,760	+				+1.8
15,760	+				+2.2
15,760	+				+1.7
15,760	+				+2.7
15,760	+				+2.4
15,761	-				+0.7
15,761	-				+2.2
15,761	-				+3.0
15,793	+				+2.4
15,793	+				+2.5
15,794	-				+2.7
16,155	-				-0.3
16,270	-				+0.2
16,389	+				-0.9
16,389	+				+0.2
16,472	+				-2.0
16,597	-				-0.3
16,781	+		PP_5421	0.30	-0.7
16,781	+		PP_5421	0.30	-0.5
16,791	-		PP_5421	0.32	-0.9
16,791	-		PP_5421	0.32	-0.8
16,791	-		PP_5421	0.32	+0.2
16,804	-		PP_5421	0.34	-1.9
16,804	-		PP_5421	0.34	+0.5
16,907	+		PP_5421	0.50	+0.8
16,984	+		PP_5421	0.62	-0.8
16,984	+		PP_5421	0.62	-0.5
16,984	+		PP_5421	0.62	+0.1
16,984	+		PP_5421	0.62	-1.3
16,984	+		PP_5421	0.62	-0.8
16,984	+		PP_5421	0.62	-0.9
16,985	-		PP_5421	0.62	+0.0
16,985	-		PP_5421	0.62	+0.1
16,997	+		PP_5421	0.64	-1.2
16,997	+		PP_5421	0.64	+0.6
16,997	+		PP_5421	0.64	-0.1
17,043	+		PP_5421	0.71	-0.4
17,044	-		PP_5421	0.71	-1.1
17,044	-		PP_5421	0.71	-0.0
17,044	-		PP_5421	0.71	-0.9
17,044	-		PP_5421	0.71	-0.7
17,044	-		PP_5421	0.71	-0.9
17,071	+		PP_5421	0.75	-0.6
17,093	+		PP_5421	0.79	-1.5
17,093	+		PP_5421	0.79	-0.5
17,093	+		PP_5421	0.79	+0.2
17,094	-		PP_5421	0.79	-0.9
17,094	-		PP_5421	0.79	+0.4
17,127	+		PP_5421	0.84	-0.7
17,158	+		PP_5421	0.89	-2.4
17,158	+		PP_5421	0.89	-0.3
17,158	+		PP_5421	0.89	-0.6
17,159	-		PP_5421	0.89	-0.8
17,159	-		PP_5421	0.89	+0.3
17,159	-		PP_5421	0.89	-0.3
17,159	-		PP_5421	0.89	+0.1
17,257	+				-1.5
17,257	+				-0.8
17,283	-				+0.5
17,283	-				-0.7
17,283	-				-1.3
17,349	+				-2.1
17,349	+				+0.1
17,349	+				-0.0
17,349	+				-0.3
17,349	+				-2.5
17,358	+				-3.4
17,358	+				-2.7
17,358	+				-1.7
17,359	-				+0.6
17,397	+				-2.5
17,415	+		PP_0014	0.11	-1.6
17,415	+		PP_0014	0.11	-0.6
17,415	+		PP_0014	0.11	-2.6
17,416	-		PP_0014	0.11	-0.6
17,416	-		PP_0014	0.11	-2.6
17,504	-		PP_0014	0.15	+0.4
17,504	-		PP_0014	0.15	+0.8
17,508	-		PP_0014	0.15	-0.2
17,521	-		PP_0014	0.16	+0.4
17,528	-		PP_0014	0.16	-0.4
17,558	+		PP_0014	0.18	+0.3
17,559	-		PP_0014	0.18	-3.3
17,565	-		PP_0014	0.18	-0.7
17,647	+		PP_0014	0.22	+0.9
17,647	+		PP_0014	0.22	+0.1
17,647	+		PP_0014	0.22	-0.9
17,647	+		PP_0014	0.22	-0.9
17,650	+		PP_0014	0.23	+1.0
17,650	+		PP_0014	0.23	-0.9
17,650	+		PP_0014	0.23	-0.3
17,651	-		PP_0014	0.23	-2.4
17,658	-		PP_0014	0.23	+1.0
17,658	-		PP_0014	0.23	-0.2
17,733	-		PP_0014	0.27	+1.2
17,735	+		PP_0014	0.27	+1.1
17,736	-		PP_0014	0.27	+0.4
17,743	-		PP_0014	0.27	-1.0
17,872	-		PP_0014	0.34	+0.1
17,893	-		PP_0014	0.35	+0.4
17,962	+		PP_0014	0.38	-0.2
17,962	+		PP_0014	0.38	+1.3
17,962	+		PP_0014	0.38	-0.1
17,962	+		PP_0014	0.38	-0.4
17,962	+		PP_0014	0.38	-0.4
17,962	+		PP_0014	0.38	+0.0
17,963	-		PP_0014	0.39	-0.4
18,105	+		PP_0014	0.46	-0.4
18,106	-		PP_0014	0.46	-0.7
18,106	-		PP_0014	0.46	-0.1
18,106	-		PP_0014	0.46	-0.6
18,132	-		PP_0014	0.47	-0.1
18,133	-		PP_0014	0.47	+0.4