Strain Fitness in Pseudomonas putida KT2440 around PP_4787

Experiment: P. put South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put South MOI 1
5,448,234	+		PP_4785	0.38	-1.5
5,448,234	+		PP_4785	0.38	-1.9
5,448,235	-		PP_4785	0.39	-0.6
5,448,235	-		PP_4785	0.39	-0.2
5,448,237	+		PP_4785	0.39	+1.2
5,448,237	+		PP_4785	0.39	-0.3
5,448,238	-		PP_4785	0.39	-1.3
5,448,238	-		PP_4785	0.39	-0.9
5,448,238	-		PP_4785	0.39	-0.2
5,448,238	-		PP_4785	0.39	-0.4
5,448,238	-		PP_4785	0.39	-2.6
5,448,238	-		PP_4785	0.39	-0.4
5,448,240	+		PP_4785	0.40	+1.8
5,448,240	+		PP_4785	0.40	-3.2
5,448,241	-		PP_4785	0.40	-0.6
5,448,382	-		PP_4785	0.66	+0.2
5,448,382	-		PP_4785	0.66	-0.1
5,448,513	+		PP_4785	0.90	-1.8
5,448,514	-		PP_4785	0.90	-0.1
5,448,679	-		PP_4786	0.32	+0.0
5,448,818	-				-1.9
5,448,818	-		PP_4786	0.75	+0.1
5,448,832	+		PP_4786	0.79	-0.3
5,448,832	+		PP_4786	0.79	+1.5
5,448,833	-		PP_4786	0.80	+0.1
5,448,833	-		PP_4786	0.80	+0.3
5,448,833	-		PP_4786	0.80	-0.1
5,448,833	-		PP_4786	0.80	+0.7
5,448,872	+				+0.5
5,448,873	-				-0.7
5,448,874	+				-0.6
5,448,874	+				+1.2
5,448,874	+				+0.3
5,448,911	+				-1.6
5,448,911	+				+0.6
5,448,911	+				-0.5
5,448,922	+				+0.6
5,448,923	-				+0.8
5,448,941	+				+0.3
5,448,941	+				+0.8
5,448,942	-				+0.1
5,448,942	-				-0.7
5,448,942	-				-0.1
5,448,942	-				+1.1
5,448,942	-				+1.2
5,449,038	+				-0.8
5,449,038	+				-0.8
5,449,039	-				+0.8
5,449,039	-				+1.2
5,449,039	-				+1.8
5,449,039	-				-0.5
5,449,039	-				+1.0
5,449,042	+				-0.3
5,449,042	+				-0.7
5,449,042	+				-1.1
5,449,042	+				-3.7
5,449,043	-				+1.2
5,449,043	-				+1.2
5,449,086	+				-0.1
5,449,086	+				-0.2
5,449,145	+				-0.1
5,449,145	+				+0.4
5,449,145	+				+0.3
5,449,145	+				+0.8
5,449,574	+		PP_4787	0.44	+0.2
5,449,699	+		PP_4787	0.57	+1.5
5,449,798	+		PP_4787	0.67	+2.6
5,449,798	+		PP_4787	0.67	+1.5
5,450,074	+				+1.0
5,450,561	+				+1.1
5,450,597	+				+0.1
5,450,598	-				+0.9
5,451,120	+		PP_4789	0.59	+0.9
5,451,121	-		PP_4789	0.59	+0.1