Experiment: P. put South MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4670 and PP_4671 overlap by 4 nucleotides PP_4671 and PP_4672 are separated by 100 nucleotides PP_4672 and PP_4673 overlap by 4 nucleotides
PP_4670: PP_4670 - diguanylate cyclase, at 5,296,091 to 5,297,362
_4670
PP_4671: PP_4671 - conserved exported protein of unknown function, at 5,297,359 to 5,297,925
_4671
PP_4672: PP_4672 - ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease, at 5,298,026 to 5,300,101
_4672
PP_4673: PP_4673 - Chi activated ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, at 5,300,098 to 5,303,772
_4673
Position (kb) 5298
5299
5300
5301 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5297.174 kb on + strand, within PP_4670 at 5297.174 kb on + strand, within PP_4670 at 5297.174 kb on + strand, within PP_4670 at 5297.175 kb on - strand, within PP_4670 at 5297.175 kb on - strand, within PP_4670 at 5297.175 kb on - strand, within PP_4670 at 5297.175 kb on - strand, within PP_4670 at 5297.181 kb on + strand, within PP_4670 at 5297.182 kb on - strand, within PP_4670 at 5297.182 kb on - strand, within PP_4670 at 5297.182 kb on - strand, within PP_4670 at 5297.212 kb on + strand, within PP_4670 at 5297.223 kb on + strand, within PP_4670 at 5297.223 kb on + strand, within PP_4670 at 5297.224 kb on - strand, within PP_4670 at 5297.548 kb on - strand, within PP_4671 at 5297.548 kb on - strand, within PP_4671 at 5297.594 kb on + strand, within PP_4671 at 5297.594 kb on + strand, within PP_4671 at 5297.703 kb on - strand, within PP_4671 at 5297.703 kb on - strand, within PP_4671 at 5297.731 kb on + strand, within PP_4671 at 5297.731 kb on + strand, within PP_4671 at 5297.731 kb on + strand, within PP_4671 at 5297.762 kb on + strand, within PP_4671 at 5297.763 kb on - strand, within PP_4671 at 5297.772 kb on + strand, within PP_4671 at 5297.779 kb on + strand, within PP_4671 at 5297.779 kb on + strand, within PP_4671 at 5297.780 kb on - strand, within PP_4671 at 5297.780 kb on - strand, within PP_4671 at 5297.780 kb on - strand, within PP_4671 at 5297.782 kb on + strand, within PP_4671 at 5297.782 kb on + strand, within PP_4671 at 5297.782 kb on + strand, within PP_4671 at 5297.782 kb on + strand, within PP_4671 at 5297.940 kb on + strand at 5297.941 kb on - strand at 5297.968 kb on + strand at 5297.968 kb on + strand at 5297.969 kb on - strand at 5297.984 kb on + strand at 5297.984 kb on + strand at 5297.985 kb on - strand at 5297.985 kb on - strand at 5297.989 kb on + strand at 5297.989 kb on + strand at 5297.989 kb on + strand at 5297.990 kb on - strand at 5297.990 kb on - strand at 5298.009 kb on + strand at 5298.009 kb on + strand at 5298.009 kb on + strand at 5298.010 kb on - strand at 5298.010 kb on - strand at 5298.027 kb on + strand at 5298.055 kb on + strand at 5298.056 kb on - strand at 5298.062 kb on + strand at 5298.063 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. put South MOI 1 remove 5,297,174 + PP_4670 0.85 -1.2 5,297,174 + PP_4670 0.85 +0.7 5,297,174 + PP_4670 0.85 +0.3 5,297,175 - PP_4670 0.85 +0.0 5,297,175 - PP_4670 0.85 +0.3 5,297,175 - PP_4670 0.85 -0.1 5,297,175 - PP_4670 0.85 -0.0 5,297,181 + PP_4670 0.86 -0.2 5,297,182 - PP_4670 0.86 +0.4 5,297,182 - PP_4670 0.86 +0.7 5,297,182 - PP_4670 0.86 +0.0 5,297,212 + PP_4670 0.88 -0.3 5,297,223 + PP_4670 0.89 -1.2 5,297,223 + PP_4670 0.89 -0.4 5,297,224 - PP_4670 0.89 -2.3 5,297,548 - PP_4671 0.33 +1.3 5,297,548 - PP_4671 0.33 -2.6 5,297,594 + PP_4671 0.41 +1.2 5,297,594 + PP_4671 0.41 +0.4 5,297,703 - PP_4671 0.61 -3.8 5,297,703 - PP_4671 0.61 -3.0 5,297,731 + PP_4671 0.66 -0.8 5,297,731 + PP_4671 0.66 +0.6 5,297,731 + PP_4671 0.66 +1.1 5,297,762 + PP_4671 0.71 -0.1 5,297,763 - PP_4671 0.71 +0.9 5,297,772 + PP_4671 0.73 -1.4 5,297,779 + PP_4671 0.74 -0.5 5,297,779 + PP_4671 0.74 +0.2 5,297,780 - PP_4671 0.74 -1.6 5,297,780 - PP_4671 0.74 -1.7 5,297,780 - PP_4671 0.74 +0.3 5,297,782 + PP_4671 0.75 -0.3 5,297,782 + PP_4671 0.75 +0.1 5,297,782 + PP_4671 0.75 -0.5 5,297,782 + PP_4671 0.75 -0.6 5,297,940 + -0.7 5,297,941 - +1.1 5,297,968 + +0.9 5,297,968 + +2.1 5,297,969 - +1.4 5,297,984 + -1.4 5,297,984 + +0.9 5,297,985 - -0.3 5,297,985 - -0.4 5,297,989 + -0.1 5,297,989 + +0.3 5,297,989 + -0.7 5,297,990 - -0.6 5,297,990 - +0.0 5,298,009 + +0.2 5,298,009 + +0.1 5,298,009 + +1.0 5,298,010 - +0.4 5,298,010 - -0.3 5,298,027 + +0.0 5,298,055 + -0.1 5,298,056 - +0.4 5,298,062 + -0.2 5,298,063 - +0.9
Or see this region's nucleotide sequence