Strain Fitness in Pseudomonas putida KT2440 around PP_4516

Experiment: P. put South MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4514 and PP_4515 are separated by 32 nucleotidesPP_4515 and PP_4516 are separated by 151 nucleotidesPP_4516 and PP_4517 are separated by 243 nucleotidesPP_4517 and PP_4518 are separated by 7 nucleotides PP_4514: PP_4514 - putative esterase of the alpha-beta hydrolase superfamily, at 5,126,448 to 5,128,634 _4514 PP_4515: PP_4515 - Transcriptional regulator, MarR family, at 5,128,667 to 5,129,104 _4515 PP_4516: PP_4516 - ATP-dependent DNA 3, at 5,129,256 to 5,131,403 _4516 PP_4517: PP_4517 - conserved protein of unknown function, at 5,131,647 to 5,132,234 _4517 PP_4518: PP_4518 - conserved protein of unknown function, at 5,132,242 to 5,132,607 _4518 Position (kb) 5129 5130 5131 5132Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 5128.272 kb on + strand, within PP_4514at 5128.273 kb on - strand, within PP_4514at 5128.398 kb on + strand, within PP_4514at 5128.398 kb on + strand, within PP_4514at 5128.398 kb on + strand, within PP_4514at 5128.399 kb on - strand, within PP_4514at 5128.399 kb on - strand, within PP_4514at 5128.399 kb on - strand, within PP_4514at 5128.399 kb on - strand, within PP_4514at 5128.425 kb on + strandat 5128.425 kb on + strandat 5128.425 kb on + strandat 5128.449 kb on + strandat 5128.450 kb on - strandat 5128.512 kb on + strandat 5128.512 kb on + strandat 5128.513 kb on - strandat 5128.556 kb on - strandat 5128.556 kb on - strandat 5128.575 kb on + strandat 5128.608 kb on + strandat 5128.711 kb on + strand, within PP_4515at 5128.712 kb on - strand, within PP_4515at 5128.754 kb on + strand, within PP_4515at 5128.754 kb on + strand, within PP_4515at 5128.817 kb on + strand, within PP_4515at 5128.817 kb on + strand, within PP_4515at 5128.818 kb on - strand, within PP_4515at 5128.818 kb on - strand, within PP_4515at 5128.818 kb on - strand, within PP_4515at 5128.818 kb on - strand, within PP_4515at 5128.922 kb on + strand, within PP_4515at 5128.922 kb on + strand, within PP_4515at 5128.922 kb on + strand, within PP_4515at 5128.923 kb on - strand, within PP_4515at 5128.923 kb on - strand, within PP_4515at 5128.923 kb on - strand, within PP_4515at 5129.104 kb on + strandat 5129.104 kb on + strandat 5129.121 kb on + strandat 5129.121 kb on + strandat 5129.121 kb on + strandat 5129.127 kb on + strandat 5129.127 kb on + strandat 5129.128 kb on - strandat 5129.131 kb on + strandat 5129.135 kb on - strandat 5129.158 kb on + strandat 5129.193 kb on + strandat 5129.296 kb on + strandat 5129.296 kb on + strandat 5129.297 kb on - strandat 5129.297 kb on - strandat 5129.297 kb on - strandat 5129.301 kb on + strandat 5129.301 kb on + strandat 5129.301 kb on + strandat 5129.301 kb on + strandat 5129.302 kb on - strandat 5129.302 kb on - strandat 5129.471 kb on + strand, within PP_4516at 5129.472 kb on - strand, within PP_4516at 5129.472 kb on - strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.632 kb on + strand, within PP_4516at 5129.740 kb on + strand, within PP_4516at 5129.740 kb on + strand, within PP_4516at 5130.136 kb on + strand, within PP_4516at 5130.136 kb on + strand, within PP_4516at 5130.137 kb on - strand, within PP_4516at 5130.466 kb on + strand, within PP_4516at 5130.467 kb on - strand, within PP_4516at 5130.467 kb on - strand, within PP_4516at 5130.469 kb on + strand, within PP_4516at 5130.469 kb on + strand, within PP_4516at 5130.469 kb on + strand, within PP_4516at 5130.470 kb on - strand, within PP_4516at 5130.656 kb on + strand, within PP_4516at 5130.784 kb on + strand, within PP_4516at 5130.785 kb on - strand, within PP_4516at 5130.943 kb on + strand, within PP_4516at 5130.944 kb on - strand, within PP_4516at 5130.944 kb on - strand, within PP_4516at 5131.069 kb on + strand, within PP_4516at 5131.069 kb on + strand, within PP_4516at 5131.070 kb on - strand, within PP_4516at 5131.136 kb on + strand, within PP_4516at 5131.216 kb on - strandat 5131.293 kb on + strandat 5131.424 kb on - strandat 5131.534 kb on + strandat 5131.535 kb on - strandat 5131.535 kb on - strandat 5131.571 kb on + strandat 5131.637 kb on + strandat 5131.637 kb on + strandat 5131.645 kb on + strandat 5131.645 kb on + strandat 5131.645 kb on + strandat 5131.645 kb on + strandat 5131.646 kb on - strandat 5131.646 kb on - strandat 5131.646 kb on - strandat 5131.646 kb on - strandat 5131.646 kb on - strandat 5131.646 kb on - strandat 5131.646 kb on - strandat 5131.646 kb on - strandat 5131.722 kb on + strand, within PP_4517at 5131.723 kb on - strand, within PP_4517at 5131.740 kb on + strand, within PP_4517at 5131.822 kb on - strand, within PP_4517at 5132.300 kb on + strand, within PP_4518

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Per-strain Table

Position Strand Gene LocusTag Fraction P. put South MOI 1
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5,128,272 + PP_4514 0.83 -0.4
5,128,273 - PP_4514 0.83 +1.1
5,128,398 + PP_4514 0.89 -0.9
5,128,398 + PP_4514 0.89 -0.3
5,128,398 + PP_4514 0.89 +0.1
5,128,399 - PP_4514 0.89 +0.5
5,128,399 - PP_4514 0.89 +0.2
5,128,399 - PP_4514 0.89 +0.9
5,128,399 - PP_4514 0.89 +0.4
5,128,425 + +0.3
5,128,425 + -0.1
5,128,425 + +0.8
5,128,449 + -1.2
5,128,450 - -1.4
5,128,512 + -0.4
5,128,512 + -2.0
5,128,513 - +0.8
5,128,556 - +1.2
5,128,556 - -0.6
5,128,575 + -0.3
5,128,608 + +0.2
5,128,711 + PP_4515 0.10 -0.8
5,128,712 - PP_4515 0.10 -1.3
5,128,754 + PP_4515 0.20 -1.7
5,128,754 + PP_4515 0.20 -4.0
5,128,817 + PP_4515 0.34 -3.9
5,128,817 + PP_4515 0.34 -3.8
5,128,818 - PP_4515 0.34 -2.6
5,128,818 - PP_4515 0.34 -5.4
5,128,818 - PP_4515 0.34 -1.6
5,128,818 - PP_4515 0.34 -1.9
5,128,922 + PP_4515 0.58 -1.2
5,128,922 + PP_4515 0.58 -2.8
5,128,922 + PP_4515 0.58 -1.8
5,128,923 - PP_4515 0.58 -2.3
5,128,923 - PP_4515 0.58 -0.3
5,128,923 - PP_4515 0.58 -3.3
5,129,104 + -1.2
5,129,104 + -3.0
5,129,121 + -4.2
5,129,121 + -3.4
5,129,121 + -2.3
5,129,127 + -3.3
5,129,127 + -5.4
5,129,128 - +0.9
5,129,131 + -4.9
5,129,135 - +1.2
5,129,158 + -0.8
5,129,193 + -0.5
5,129,296 + +0.3
5,129,296 + -0.1
5,129,297 - +0.8
5,129,297 - -1.1
5,129,297 - -0.5
5,129,301 + -2.0
5,129,301 + -0.0
5,129,301 + -0.9
5,129,301 + +0.6
5,129,302 - +0.6
5,129,302 - +0.4
5,129,471 + PP_4516 0.10 -0.1
5,129,472 - PP_4516 0.10 -0.6
5,129,472 - PP_4516 0.10 +0.3
5,129,473 + PP_4516 0.10 -0.4
5,129,473 + PP_4516 0.10 -0.7
5,129,473 + PP_4516 0.10 +0.2
5,129,473 + PP_4516 0.10 +0.9
5,129,473 + PP_4516 0.10 -1.0
5,129,473 + PP_4516 0.10 +0.6
5,129,473 + PP_4516 0.10 -2.2
5,129,474 - PP_4516 0.10 +0.3
5,129,474 - PP_4516 0.10 -0.0
5,129,474 - PP_4516 0.10 +0.3
5,129,474 - PP_4516 0.10 +0.6
5,129,474 - PP_4516 0.10 +0.2
5,129,474 - PP_4516 0.10 +0.6
5,129,474 - PP_4516 0.10 +0.1
5,129,632 + PP_4516 0.18 -2.5
5,129,740 + PP_4516 0.23 +0.2
5,129,740 + PP_4516 0.23 +1.5
5,130,136 + PP_4516 0.41 +0.5
5,130,136 + PP_4516 0.41 +0.2
5,130,137 - PP_4516 0.41 -0.7
5,130,466 + PP_4516 0.56 +0.2
5,130,467 - PP_4516 0.56 +0.4
5,130,467 - PP_4516 0.56 -2.0
5,130,469 + PP_4516 0.56 -0.0
5,130,469 + PP_4516 0.56 +0.2
5,130,469 + PP_4516 0.56 -0.3
5,130,470 - PP_4516 0.57 -1.0
5,130,656 + PP_4516 0.65 +0.5
5,130,784 + PP_4516 0.71 -1.6
5,130,785 - PP_4516 0.71 +0.3
5,130,943 + PP_4516 0.79 +0.6
5,130,944 - PP_4516 0.79 -0.4
5,130,944 - PP_4516 0.79 -3.2
5,131,069 + PP_4516 0.84 +0.2
5,131,069 + PP_4516 0.84 -1.5
5,131,070 - PP_4516 0.84 -0.9
5,131,136 + PP_4516 0.88 -1.0
5,131,216 - -0.1
5,131,293 + -1.7
5,131,424 - -0.1
5,131,534 + -1.0
5,131,535 - +0.8
5,131,535 - +0.2
5,131,571 + -1.2
5,131,637 + -0.8
5,131,637 + -0.8
5,131,645 + -1.3
5,131,645 + -0.7
5,131,645 + -1.9
5,131,645 + +1.5
5,131,646 - -2.1
5,131,646 - -1.0
5,131,646 - +0.4
5,131,646 - -1.0
5,131,646 - -0.2
5,131,646 - -2.4
5,131,646 - -0.2
5,131,646 - +0.1
5,131,722 + PP_4517 0.13 -3.9
5,131,723 - PP_4517 0.13 -1.0
5,131,740 + PP_4517 0.16 +0.5
5,131,822 - PP_4517 0.30 -3.5
5,132,300 + PP_4518 0.16 -1.2

Or see this region's nucleotide sequence