Strain Fitness in Pseudomonas putida KT2440 around PP_3627

Experiment: P. put South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put South MOI 1
4,122,234	-		PP_3625	0.37	+0.2
4,122,382	+		PP_3625	0.60	-0.2
4,122,383	-		PP_3625	0.61	-0.2
4,122,427	-		PP_3625	0.67	+0.1
4,122,427	-		PP_3625	0.67	-0.5
4,122,554	+		PP_3625	0.87	-0.0
4,122,554	+		PP_3625	0.87	+2.7
4,122,892	+				+0.1
4,122,892	+				-0.4
4,122,893	-				-1.1
4,122,893	-				-1.8
4,123,073	+		PP_3627	0.56	-2.6
4,123,074	-		PP_3627	0.56	-4.7
4,123,074	-		PP_3627	0.56	-5.3
4,123,074	-		PP_3627	0.56	-3.5
4,123,074	-		PP_3627	0.56	-5.1
4,123,088	+		PP_3627	0.61	-3.4
4,123,088	+		PP_3627	0.61	-4.4
4,123,095	-		PP_3627	0.63	-2.9
4,123,213	+				-4.8
4,123,214	-				-2.9
4,123,214	-				-4.4
4,123,265	+				-4.9
4,123,265	+				-2.3
4,123,266	-				-1.0
4,123,276	+				-3.8
4,123,276	+				-3.7
4,123,277	-				+0.3
4,123,348	-				+0.9
4,123,354	-				+0.9
4,123,354	-				+0.2
4,123,407	+				-5.4
4,123,423	+				-4.4
4,123,424	-				+0.3
4,123,502	+				-2.2
4,123,502	+				-1.0
4,123,503	-				+0.3
4,123,503	-				+0.6
4,123,503	-				-0.1
4,123,503	-				-1.0
4,123,523	+				-5.5
4,123,523	+				-0.6
4,123,523	+				-3.6
4,123,523	+				-0.5
4,123,523	+				-2.0
4,123,523	+				-1.3
4,123,523	+				-0.1
4,123,523	+				-2.4
4,123,523	+				-1.4
4,123,523	+				-1.9
4,123,524	-				-2.1
4,123,524	-				+2.3
4,123,524	-				+0.4
4,123,524	-				+1.2
4,123,524	-				-0.0
4,123,524	-				-0.9
4,123,524	-				+0.9
4,123,524	-				-0.0
4,123,524	-				+0.1
4,123,524	-				+0.0
4,123,612	-				+0.8
4,123,875	+		PP_3628	0.20	-0.3
4,123,946	+		PP_3628	0.24	-0.8
4,123,946	+		PP_3628	0.24	+0.4
4,123,947	-		PP_3628	0.24	+0.6
4,123,950	+		PP_3628	0.24	-0.5
4,123,950	+		PP_3628	0.24	+0.2
4,123,950	+		PP_3628	0.24	-0.3
4,123,950	+		PP_3628	0.24	+0.1
4,123,950	+		PP_3628	0.24	-0.6
4,123,951	-		PP_3628	0.24	-1.8
4,124,014	+		PP_3628	0.28	-0.4
4,124,014	+		PP_3628	0.28	-0.7
4,124,015	-		PP_3628	0.28	+0.6
4,124,051	+		PP_3628	0.30	-0.4
4,124,052	-		PP_3628	0.30	-1.1
4,124,052	-		PP_3628	0.30	+0.1
4,124,052	-		PP_3628	0.30	-0.7
4,124,052	-		PP_3628	0.30	-0.9
4,124,052	-		PP_3628	0.30	+1.2