Strain Fitness in Pseudomonas putida KT2440 around PP_3216

Experiment: P. put South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put South MOI 1
3,649,439	-				-0.8
3,649,450	+				-2.7
3,649,629	+				+0.6
3,649,630	-				+1.6
3,650,018	+				+0.5
3,650,019	-				+0.9
3,650,087	-				+0.4
3,650,087	-				-0.3
3,650,087	-				+0.0
3,650,087	-				+1.5
3,650,138	-				+0.0
3,650,170	+				+0.1
3,650,311	+		PP_3216	0.16	-1.7
3,650,311	+		PP_3216	0.16	-0.3
3,650,367	+		PP_3216	0.25	-0.4
3,650,367	+		PP_3216	0.25	-1.0
3,650,635	+		PP_3216	0.69	-0.4
3,650,635	+		PP_3216	0.69	-0.2
3,650,636	-		PP_3216	0.69	-1.2
3,650,636	-		PP_3216	0.69	-3.1
3,650,636	-		PP_3216	0.69	-0.8
3,651,001	+				-0.8
3,651,019	-				-0.5
3,651,049	+				+0.6
3,651,105	-				+0.3
3,651,126	-				+0.3
3,651,250	-		PP_3217	0.14	+1.2
3,651,250	-		PP_3217	0.14	-1.3
3,651,264	-		PP_3217	0.15	-0.6
3,651,264	-		PP_3217	0.15	+0.6
3,651,581	+		PP_3217	0.49	-0.5
3,651,582	-		PP_3217	0.49	+0.6
3,651,653	+		PP_3217	0.57	+0.8
3,651,653	+		PP_3217	0.57	+0.4
3,651,653	+		PP_3217	0.57	-0.3
3,651,653	+		PP_3217	0.57	+1.8
3,651,653	+		PP_3217	0.57	-0.5
3,651,654	-		PP_3217	0.57	-0.2
3,651,654	-		PP_3217	0.57	-1.3
3,651,654	-		PP_3217	0.57	+0.1
3,651,654	-		PP_3217	0.57	-0.7
3,651,654	-		PP_3217	0.57	+0.4
3,651,654	-		PP_3217	0.57	-0.4