Strain Fitness in Pseudomonas putida KT2440 around PP_3165

Experiment: P. put South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put South MOI 1
3,584,809	-				-0.2
3,584,824	+				+0.6
3,584,825	-				+0.5
3,584,875	-				-0.1
3,584,983	+				+1.3
3,584,983	+				-0.7
3,584,984	-				-3.0
3,584,984	-				-0.0
3,584,984	-				+0.6
3,584,987	+				+0.4
3,584,988	-				+0.3
3,585,098	-		PP_3164	0.14	+0.1
3,585,354	+		PP_3164	0.48	-0.3
3,585,355	-		PP_3164	0.48	-1.0
3,585,355	-		PP_3164	0.48	-0.8
3,585,595	-		PP_3164	0.80	+0.9
3,585,851	+				-0.1
3,585,852	-				-3.6
3,585,909	+				+0.0
3,585,909	+				+0.8
3,585,910	-				-0.2
3,585,910	-				+0.1
3,585,924	+				+1.1
3,585,924	+				-0.9
3,585,924	+				-0.5
3,585,925	-				+0.1
3,585,925	-				-2.5
3,585,925	-				-0.1
3,585,925	-				-0.7
3,585,997	-		PP_3165	0.14	+0.4
3,585,997	-		PP_3165	0.14	-0.6
3,585,997	-		PP_3165	0.14	-0.6
3,586,149	+		PP_3165	0.26	-0.7
3,586,150	-		PP_3165	0.26	+0.1
3,586,370	-		PP_3165	0.42	-1.8
3,586,384	-		PP_3165	0.43	-0.2
3,586,386	+		PP_3165	0.44	-0.7
3,586,415	-		PP_3165	0.46	+0.2
3,586,611	+		PP_3165	0.60	-0.0
3,586,657	-		PP_3165	0.64	-0.3
3,586,836	+		PP_3165	0.77	-0.8
3,586,891	-		PP_3165	0.82	-1.4
3,586,912	-		PP_3165	0.83	-0.3
3,586,964	+				+1.4
3,587,157	+				-0.1
3,587,186	-				+0.4
3,587,197	-				-0.6
3,587,231	-				-0.2
3,587,345	+		PP_3166	0.20	+0.4
3,587,346	-		PP_3166	0.20	-0.3
3,587,492	+		PP_3166	0.36	+0.9
3,587,492	+		PP_3166	0.36	+0.3
3,587,493	-		PP_3166	0.36	+0.9
3,587,493	-		PP_3166	0.36	+0.1
3,587,657	+		PP_3166	0.54	-0.2
3,587,658	-		PP_3166	0.54	+1.6
3,587,688	-		PP_3166	0.57	-0.6
3,587,688	-		PP_3166	0.57	+0.8
3,587,759	+		PP_3166	0.65	-0.0
3,587,759	+		PP_3166	0.65	+0.9
3,587,845	+		PP_3166	0.74	-0.5
3,587,845	+		PP_3166	0.74	+0.0
3,587,884	-		PP_3166	0.79	+0.7
3,587,903	+		PP_3166	0.81	+0.6
3,587,903	+		PP_3166	0.81	+1.0
3,587,903	+		PP_3166	0.81	+0.7
3,587,904	-		PP_3166	0.81	-0.0
3,587,904	-		PP_3166	0.81	+0.1
3,587,904	-		PP_3166	0.81	+0.2
3,587,924	+		PP_3166	0.83	-0.2