Strain Fitness in Pseudomonas putida KT2440 around PP_3055

Experiment: P. put South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put South MOI 1
3,435,152	+				+0.8
3,435,152	+				-1.3
3,435,494	+		PP_3054	0.41	+1.1
3,435,494	+		PP_3054	0.41	-1.0
3,435,500	+		PP_3054	0.42	+0.2
3,435,500	+		PP_3054	0.42	+0.6
3,435,501	-		PP_3054	0.42	-0.5
3,435,586	-		PP_3054	0.51	-0.0
3,435,586	-				+0.4
3,435,629	+		PP_3054	0.55	+0.2
3,435,756	+		PP_3054	0.68	-0.2
3,435,756	+		PP_3054	0.68	+0.2
3,435,942	-		PP_3054	0.87	-0.2
3,435,942	-		PP_3054	0.87	-0.9
3,435,942	-		PP_3054	0.87	+0.7
3,435,952	-		PP_3054	0.88	+0.7
3,435,957	+		PP_3054	0.88	+0.8
3,436,022	+				+0.1
3,436,023	-				+0.4
3,436,238	-		PP_3055	0.21	-0.5
3,436,370	+		PP_3055	0.37	-0.4
3,436,510	+		PP_3055	0.55	-1.3
3,436,772	-		PP_3055	0.87	-1.0
3,436,875	-				-0.2
3,436,888	+				+1.1
3,436,889	-				+1.6
3,436,990	-		PP_3056	0.13	-0.3
3,437,037	+		PP_3056	0.18	+0.9
3,437,038	-		PP_3056	0.19	-0.6
3,437,193	+		PP_3056	0.36	+0.7
3,437,193	+		PP_3056	0.36	+0.4
3,437,193	+		PP_3056	0.36	+0.9
3,437,194	-		PP_3056	0.36	-0.3
3,437,194	-		PP_3056	0.36	-2.9
3,437,194	-		PP_3056	0.36	+0.0
3,437,738	+				+0.6
3,437,738	+				+0.5
3,437,739	-				-0.1
3,437,751	+				-0.5
3,437,752	-				+0.2
3,437,752	-				+1.3
3,437,752	-				-0.4
3,437,752	-				+0.7
3,437,759	+				-0.2
3,437,760	-				-0.2
3,437,760	-				-2.3
3,437,760	-				-0.1
3,437,817	+				-0.5
3,437,817	+				-0.5
3,437,846	+		PP_3057	0.12	-0.9
3,437,847	-		PP_3057	0.12	-0.4