Strain Fitness in Pseudomonas putida KT2440 around PP_2393

Experiment: P. put South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put South MOI 1
2,730,041	+		PP_2392	0.47	-0.2
2,730,042	-		PP_2392	0.47	-0.2
2,730,068	+		PP_2392	0.49	-0.3
2,730,069	-		PP_2392	0.49	-0.8
2,730,112	+				-1.2
2,730,112	+		PP_2392	0.53	-0.2
2,730,113	-		PP_2392	0.54	+0.2
2,730,118	+		PP_2392	0.54	-0.6
2,730,118	+		PP_2392	0.54	-0.4
2,730,118	+		PP_2392	0.54	+0.4
2,730,118	+		PP_2392	0.54	+0.1
2,730,119	-		PP_2392	0.54	-0.4
2,730,119	-		PP_2392	0.54	+0.5
2,730,319	+		PP_2392	0.73	+0.8
2,730,320	-		PP_2392	0.73	-1.3
2,730,349	+		PP_2392	0.76	-0.6
2,730,349	+		PP_2392	0.76	+0.0
2,730,350	-		PP_2392	0.76	+0.5
2,730,350	-		PP_2392	0.76	+0.2
2,730,518	+				+0.7
2,730,596	-				-0.3
2,730,596	-				+0.2
2,730,624	+				-0.9
2,730,629	+				-0.5
2,730,629	+				+0.1
2,730,630	-				+0.1
2,730,630	-				-0.3
2,730,639	+				+0.8
2,730,639	+				-0.2
2,730,639	+				+0.2
2,730,640	-				-0.7
2,730,640	-				+2.8
2,730,640	-				-0.2
2,730,910	+				+3.0
2,730,910	+		PP_2393	0.10	+0.3
2,730,911	-		PP_2393	0.10	-0.6
2,731,007	-		PP_2393	0.15	-1.7
2,731,165	+		PP_2393	0.21	+0.2
2,731,166	-		PP_2393	0.21	-0.1
2,731,204	+		PP_2393	0.23	+0.2
2,731,204	+		PP_2393	0.23	+0.6
2,731,204	+		PP_2393	0.23	-0.2
2,731,205	-		PP_2393	0.23	-1.3
2,731,205	-		PP_2393	0.23	-1.0
2,731,205	-		PP_2393	0.23	+0.2
2,731,205	-		PP_2393	0.23	+0.0
2,731,598	-		PP_2393	0.40	+0.5
2,731,657	+		PP_2393	0.42	+1.2
2,731,657	+		PP_2393	0.42	-1.6
2,731,658	-		PP_2393	0.42	+0.6
2,731,658	-		PP_2393	0.42	-0.1
2,731,795	+		PP_2393	0.48	+0.2
2,731,795	+		PP_2393	0.48	-1.2
2,731,795	+		PP_2393	0.48	+0.1
2,731,796	-				+2.0
2,731,796	-		PP_2393	0.48	+0.2
2,731,796	-		PP_2393	0.48	+0.6
2,731,925	-		PP_2393	0.53	+0.8
2,731,992	-		PP_2393	0.56	-0.7
2,732,164	+		PP_2393	0.64	+1.2
2,732,164	+		PP_2393	0.64	+0.7
2,732,164	+		PP_2393	0.64	-1.1
2,732,281	+		PP_2393	0.68	-0.0
2,732,293	+		PP_2393	0.69	-0.2
2,732,293	+		PP_2393	0.69	-1.1
2,732,518	+		PP_2393	0.79	+0.6
2,732,563	+		PP_2393	0.80	+0.3
2,732,563	+		PP_2393	0.80	+0.3
2,732,564	-		PP_2393	0.80	+0.6
2,732,564	-		PP_2393	0.80	-0.3
2,732,630	-		PP_2393	0.83	-0.0
2,732,657	-		PP_2393	0.84	+0.3
2,732,666	-		PP_2393	0.85	+0.5
2,732,666	-		PP_2393	0.85	+0.0
2,732,666	-		PP_2393	0.85	+0.3
2,732,677	+		PP_2393	0.85	+0.7
2,732,677	+		PP_2393	0.85	+0.7
2,732,678	-		PP_2393	0.85	-1.7
2,732,681	+		PP_2393	0.85	+0.1
2,732,807	-				+0.2
2,732,807	-				+1.4
2,732,807	-				-0.1
2,732,860	+				-1.0
2,732,926	+				-0.1
2,732,926	+				+0.6
2,732,927	-				-0.5
2,732,927	-				-1.5
2,732,942	+				+0.4
2,733,011	+				-1.4
2,733,012	-				-0.9
2,733,012	-				+0.4
2,733,033	+				-1.5
2,733,034	-				-0.9
2,733,034	-				+1.0
2,733,037	+				+0.7
2,733,037	+				+0.2
2,733,037	+				-1.1
2,733,037	+				+0.2
2,733,037	+				-0.4
2,733,037	+				-1.2
2,733,038	-				+0.3
2,733,038	-				+0.0
2,733,038	-				+0.3
2,733,038	-				-0.6
2,733,038	-				-2.0
2,733,038	-				-1.7
2,733,038	-				-0.8
2,733,038	-				+1.1
2,733,041	+				-0.2
2,733,041	+				+0.2
2,733,041	+				-0.1
2,733,042	-				+0.3
2,733,042	-				-2.0
2,733,114	+				+0.2
2,733,114	+				-1.9
2,733,114	+				-0.4
2,733,115	-				+0.5
2,733,115	-				-1.0
2,733,115	-				+0.3
2,733,141	+				-0.3
2,733,175	+				-0.0
2,733,176	-				+1.0
2,733,176	-				+0.4
2,733,299	+				+1.3
2,733,394	+				+0.2
2,733,421	+				-0.1
2,733,422	-				+1.4
2,733,422	-				+0.3
2,733,422	-				-0.3
2,733,422	-				-0.6
2,733,422	-				+0.3
2,733,422	-				+0.7
2,733,425	+				+0.8
2,733,426	-				+0.7
2,733,461	-				+0.2
2,733,461	-				+0.2
2,733,564	+		PP_2394	0.10	-0.8
2,733,565	-		PP_2394	0.10	-0.2
2,733,565	-		PP_2394	0.10	+0.2
2,733,691	+		PP_2394	0.13	+0.6
2,733,734	+		PP_2394	0.14	+0.4
2,733,734	+		PP_2394	0.14	-1.5
2,733,734	+		PP_2394	0.14	-1.3
2,733,735	-		PP_2394	0.14	-0.6
2,733,735	-		PP_2394	0.14	+0.2
2,733,735	-				+1.4
2,733,919	+		PP_2394	0.18	-1.3
2,733,919	+		PP_2394	0.18	-2.0
2,733,919	+		PP_2394	0.18	-2.8
2,733,919	+		PP_2394	0.18	+0.7
2,733,919	+		PP_2394	0.18	-1.1
2,733,919	+		PP_2394	0.18	+1.5
2,733,920	-		PP_2394	0.18	-0.0
2,733,924	-		PP_2394	0.19	+0.4
2,733,973	+		PP_2394	0.20	+1.5
2,733,973	+		PP_2394	0.20	-0.4