Strain Fitness in Pseudomonas putida KT2440 around PP_2144

Experiment: P. put South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put South MOI 1
2,445,156	-		PP_2143	0.42	+1.2
2,445,169	-		PP_2143	0.44	+3.2
2,445,549	-				-0.4
2,445,682	+				+0.1
2,445,713	+				-0.7
2,445,723	-				+1.8
2,445,819	+		PP_2144	0.13	-0.4
2,445,819	+		PP_2144	0.13	+1.6
2,446,005	-		PP_2144	0.39	+2.4
2,446,005	-		PP_2144	0.39	-1.8
2,446,109	-		PP_2144	0.54	+1.2
2,446,123	+		PP_2144	0.56	+2.5
2,446,123	+		PP_2144	0.56	+1.6
2,446,123	+				-0.5
2,446,124	-		PP_2144	0.56	+0.7
2,446,124	-		PP_2144	0.56	+1.0
2,446,124	-		PP_2144	0.56	+0.8
2,446,124	-		PP_2144	0.56	+1.6
2,446,124	-		PP_2144	0.56	+0.4
2,446,144	+		PP_2144	0.59	+0.1
2,446,523	+				+2.5
2,446,524	-				-1.3
2,446,524	-				-3.5
2,446,657	-				-2.7
2,446,657	-				-2.6
2,446,732	-		PP_2145	0.12	-0.5
2,446,826	+		PP_2145	0.21	-3.3
2,446,827	-		PP_2145	0.21	-2.3
2,447,257	+		PP_2145	0.64	-1.5
2,447,258	-		PP_2145	0.64	-3.5
2,447,258	-		PP_2145	0.64	-2.8
2,447,258	-		PP_2145	0.64	-2.1
2,447,258	-		PP_2145	0.64	-1.1
2,447,434	-		PP_2145	0.81	-3.7