Strain Fitness in Pseudomonas putida KT2440 around PP_1654

Experiment: P. put South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put South MOI 1
1,848,385	+				+1.7
1,848,520	+				-1.7
1,848,521	-				-1.9
1,848,525	+				-0.1
1,848,526	-				-1.8
1,848,526	-				-1.1
1,848,554	+				-0.6
1,848,555	-				+1.7
1,848,555	-				+1.7
1,848,602	-				-2.0
1,848,647	-				+0.7
1,848,647	-				+0.1
1,848,670	+		PP_1654	0.12	+0.1
1,848,671	-		PP_1654	0.12	+0.7
1,848,887	+		PP_1654	0.36	+0.7
1,848,888	-		PP_1654	0.36	-1.5
1,849,023	-		PP_1654	0.51	-0.3
1,849,023	-		PP_1654	0.51	+0.7
1,849,023	-		PP_1654	0.51	+0.1
1,849,103	-		PP_1654	0.60	+0.7
1,849,125	-		PP_1654	0.63	+0.7
1,849,218	-		PP_1654	0.73	-0.3
1,849,428	-				+0.7
1,849,458	-				-5.3
1,849,607	-		PP_1655	0.11	-4.7
1,849,607	-		PP_1655	0.11	-3.1
1,850,014	-		PP_1655	0.41	-3.7
1,850,014	-		PP_1655	0.41	-5.9