Strain Fitness in Pseudomonas putida KT2440 around PP_1250

Experiment: P. put South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put South MOI 1
1,425,258	+		PP_1248	0.86	-0.0
1,425,258	+		PP_1248	0.86	-0.1
1,425,258	+		PP_1248	0.86	-0.2
1,425,258	+		PP_1248	0.86	-1.1
1,425,405	+				-0.9
1,425,488	+		PP_1249	0.42	+0.3
1,425,489	-		PP_1249	0.43	-0.1
1,425,489	-		PP_1249	0.43	+0.2
1,425,512	+		PP_1249	0.55	+0.2
1,425,512	+		PP_1249	0.55	+1.3
1,425,512	+		PP_1249	0.55	-0.3
1,425,512	+		PP_1249	0.55	-1.5
1,425,512	+		PP_1249	0.55	-0.5
1,425,512	+		PP_1249	0.55	+1.2
1,425,513	-		PP_1249	0.55	+0.1
1,425,513	-		PP_1249	0.55	+0.3
1,425,513	-		PP_1249	0.55	-0.7
1,425,513	-		PP_1249	0.55	-0.2
1,425,518	+		PP_1249	0.58	-0.2
1,425,577	+		PP_1249	0.89	-1.3
1,425,596	+				-0.8
1,425,597	-				+0.4
1,425,703	-				+0.9
1,427,588	+				+0.2
1,427,677	+				-0.7
1,427,932	-				+0.3
1,427,932	-				+1.8
1,428,108	-		PP_1251	0.13	-1.6
1,428,108	-		PP_1251	0.13	+0.7
1,428,108	-		PP_1251	0.13	+1.2
1,428,108	-		PP_1251	0.13	+0.8
1,428,204	+		PP_1251	0.19	+0.4
1,428,348	-		PP_1251	0.28	+1.3
1,428,348	-		PP_1251	0.28	+0.7