Strain Fitness in Pseudomonas putida KT2440 around PP_1220

Experiment: P. put South MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1218 and PP_1219 are separated by 2 nucleotidesPP_1219 and PP_1220 are separated by 14 nucleotidesPP_1220 and PP_1221 overlap by 1 nucleotides PP_1218: PP_1218 - putative acyl-CoA thioesterase, at 1,395,436 to 1,395,888 _1218 PP_1219: PP_1219 - subunit of a proton-driven complex used for maintenance of outer membrane stability, at 1,395,891 to 1,396,586 _1219 PP_1220: PP_1220 - subunit of a proton-driven complex used for maintenance of outer membrane stability, at 1,396,601 to 1,397,053 _1220 PP_1221: PP_1221 - colicin S4 and filamentous phage transport system, at 1,397,053 to 1,398,171 _1221 Position (kb) 1396 1397 1398Strain fitness (log2 ratio) -3 -2 -1 0 1at 1395.725 kb on + strand, within PP_1218at 1395.821 kb on + strand, within PP_1218at 1396.584 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. put South MOI 1
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1,395,725 + PP_1218 0.64 +0.7
1,395,821 + PP_1218 0.85 -0.5
1,396,584 + -3.0

Or see this region's nucleotide sequence