Strain Fitness in Pseudomonas putida KT2440 around PP_0979

Experiment: P. put South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put South MOI 1
1,117,917	-				+0.3
1,117,980	+		PP_0978	0.18	+0.3
1,117,981	-		PP_0978	0.18	+0.2
1,118,167	+		PP_0978	0.69	+0.0
1,118,298	+				-0.7
1,118,320	+				-2.6
1,118,321	-				-2.0
1,118,608	+		PP_0979	0.75	-0.6
1,118,609	-		PP_0979	0.75	-0.1
1,118,609	-		PP_0979	0.75	+0.7
1,118,609	-		PP_0979	0.75	+0.2
1,118,695	+				+0.8
1,118,695	+				-0.3
1,118,695	+				-0.3
1,118,696	-				+0.2
1,118,790	+				+1.1
1,118,790	+				+0.5
1,118,790	+				+0.3
1,118,791	-				+1.7
1,118,887	-				+0.0
1,118,887	-				+1.1
1,119,073	+		PP_0980	0.21	+0.9
1,119,175	-		PP_0980	0.27	+1.0
1,119,393	+		PP_0980	0.42	+0.5
1,119,451	+		PP_0980	0.46	+1.4
1,119,451	+		PP_0980	0.46	+1.3
1,119,451	+		PP_0980	0.46	+0.2
1,119,452	-		PP_0980	0.46	+0.6
1,119,452	-		PP_0980	0.46	+1.0
1,119,454	+		PP_0980	0.46	+0.8
1,119,454	+		PP_0980	0.46	+0.2
1,119,455	-		PP_0980	0.46	-1.5
1,119,455	-		PP_0980	0.46	+0.0
1,119,504	+		PP_0980	0.49	+0.1
1,119,657	+		PP_0980	0.60	-2.8