Experiment: P. put South MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0790 and PP_0791 are separated by 44 nucleotides PP_0791 and PP_0792 are separated by 2 nucleotides PP_0792 and PP_0793 are separated by 284 nucleotides
PP_0790: PP_0790 - Inner membrane protein AmpE, at 906,559 to 907,389
_0790
PP_0791: PP_0791 - putative hydrolase, at 907,434 to 908,210
_0791
PP_0792: PP_0792 - catabolite repressor-activator, DNA-binding transcriptional dual regulator, at 908,213 to 909,208
_0792
PP_0793: PP_0793 - Phosphotransferase system, fructose-specific EI/HPr/EIIA components, at 909,493 to 912,345
_0793
Position (kb) 908
909
910 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 907.554 kb on + strand, within PP_0791 at 907.564 kb on + strand, within PP_0791 at 907.705 kb on + strand, within PP_0791 at 907.706 kb on - strand, within PP_0791 at 907.724 kb on - strand, within PP_0791 at 907.724 kb on - strand, within PP_0791 at 907.724 kb on - strand, within PP_0791 at 907.769 kb on - strand, within PP_0791 at 907.769 kb on - strand, within PP_0791 at 907.769 kb on - strand, within PP_0791 at 907.904 kb on - strand, within PP_0791 at 907.906 kb on + strand, within PP_0791 at 907.907 kb on - strand, within PP_0791 at 907.907 kb on - strand, within PP_0791 at 907.907 kb on - strand, within PP_0791 at 907.927 kb on - strand, within PP_0791 at 907.927 kb on - strand, within PP_0791 at 907.927 kb on - strand, within PP_0791 at 907.935 kb on + strand, within PP_0791 at 908.012 kb on - strand, within PP_0791 at 908.092 kb on + strand, within PP_0791 at 908.092 kb on + strand, within PP_0791 at 908.092 kb on + strand, within PP_0791 at 908.092 kb on + strand, within PP_0791 at 908.093 kb on - strand, within PP_0791 at 908.093 kb on - strand, within PP_0791 at 908.271 kb on + strand at 908.272 kb on - strand at 908.272 kb on - strand at 908.466 kb on + strand, within PP_0792 at 908.467 kb on - strand, within PP_0792 at 908.467 kb on - strand, within PP_0792 at 908.467 kb on - strand, within PP_0792 at 908.467 kb on - strand, within PP_0792 at 908.467 kb on - strand, within PP_0792 at 908.566 kb on - strand, within PP_0792 at 908.586 kb on + strand, within PP_0792 at 908.586 kb on + strand, within PP_0792 at 908.587 kb on - strand, within PP_0792 at 908.809 kb on - strand, within PP_0792 at 908.934 kb on + strand, within PP_0792 at 908.982 kb on + strand, within PP_0792 at 908.983 kb on - strand, within PP_0792 at 908.983 kb on - strand, within PP_0792 at 909.029 kb on - strand, within PP_0792 at 909.109 kb on + strand at 909.153 kb on + strand at 909.153 kb on + strand at 909.153 kb on + strand at 909.224 kb on - strand at 909.224 kb on - strand at 909.224 kb on - strand at 909.256 kb on + strand at 909.256 kb on + strand at 909.345 kb on + strand at 909.435 kb on - strand at 909.435 kb on - strand at 909.435 kb on - strand at 909.453 kb on + strand at 909.454 kb on - strand at 909.454 kb on - strand at 909.454 kb on - strand at 909.454 kb on - strand at 909.607 kb on + strand at 909.607 kb on + strand at 909.681 kb on + strand at 909.681 kb on + strand at 909.682 kb on - strand at 909.706 kb on + strand at 909.719 kb on + strand at 909.747 kb on - strand at 909.772 kb on + strand at 909.773 kb on - strand at 909.786 kb on + strand, within PP_0793 at 909.786 kb on + strand, within PP_0793 at 909.786 kb on + strand, within PP_0793 at 909.787 kb on - strand, within PP_0793
Per-strain Table
Position Strand Gene LocusTag Fraction P. put South MOI 1 remove 907,554 + PP_0791 0.15 -0.1 907,564 + PP_0791 0.17 -0.4 907,705 + PP_0791 0.35 -0.3 907,706 - PP_0791 0.35 +0.3 907,724 - PP_0791 0.37 +0.5 907,724 - PP_0791 0.37 -0.7 907,724 - PP_0791 0.37 -0.4 907,769 - PP_0791 0.43 -0.5 907,769 - PP_0791 0.43 +0.4 907,769 - PP_0791 0.43 +0.6 907,904 - PP_0791 0.60 +0.1 907,906 + PP_0791 0.61 +0.3 907,907 - PP_0791 0.61 -0.2 907,907 - PP_0791 0.61 -1.7 907,907 - PP_0791 0.61 -1.1 907,927 - PP_0791 0.63 +0.6 907,927 - PP_0791 0.63 +0.6 907,927 - PP_0791 0.63 -1.5 907,935 + PP_0791 0.64 +0.2 908,012 - PP_0791 0.74 +0.1 908,092 + PP_0791 0.85 -1.3 908,092 + PP_0791 0.85 -0.5 908,092 + PP_0791 0.85 -0.1 908,092 + PP_0791 0.85 +0.4 908,093 - PP_0791 0.85 +0.9 908,093 - PP_0791 0.85 -0.8 908,271 + -3.4 908,272 - +0.3 908,272 - +0.1 908,466 + PP_0792 0.25 +0.4 908,467 - PP_0792 0.26 -1.1 908,467 - PP_0792 0.26 +0.2 908,467 - PP_0792 0.26 -0.6 908,467 - PP_0792 0.26 -0.2 908,467 - PP_0792 0.26 +0.1 908,566 - PP_0792 0.35 -2.1 908,586 + PP_0792 0.37 +0.4 908,586 + PP_0792 0.37 +0.3 908,587 - PP_0792 0.38 -1.9 908,809 - PP_0792 0.60 -0.3 908,934 + PP_0792 0.72 -0.5 908,982 + PP_0792 0.77 +0.2 908,983 - PP_0792 0.77 +0.6 908,983 - PP_0792 0.77 -0.2 909,029 - PP_0792 0.82 -0.8 909,109 + -0.6 909,153 + -2.9 909,153 + -0.5 909,153 + +0.7 909,224 - +0.4 909,224 - -0.1 909,224 - +0.6 909,256 + +0.3 909,256 + +0.1 909,345 + +0.7 909,435 - +0.3 909,435 - +0.2 909,435 - +0.3 909,453 + -0.2 909,454 - +0.1 909,454 - +1.8 909,454 - -0.9 909,454 - +0.4 909,607 + +0.8 909,607 + +0.9 909,681 + -1.0 909,681 + +1.8 909,682 - +1.4 909,706 + +1.0 909,719 + +1.2 909,747 - -0.4 909,772 + +1.3 909,773 - -1.1 909,786 + PP_0793 0.10 -0.1 909,786 + PP_0793 0.10 -0.9 909,786 + PP_0793 0.10 +0.3 909,787 - PP_0793 0.10 +1.3
Or see this region's nucleotide sequence