Strain Fitness in Pseudomonas putida KT2440 around PP_0535

Experiment: P. put South MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0533 and PP_0534 overlap by 1 nucleotidesPP_0534 and PP_0535 are separated by 181 nucleotidesPP_0535 and PP_0536 are separated by 161 nucleotides PP_0533: PP_0533 - histidine kinase, at 618,669 to 619,997 _0533 PP_0534: PP_0534 - putative Transcriptional regulator PfeR, at 619,997 to 620,689 _0534 PP_0535: PP_0535 - Outer membrane ferric siderophore receptor, at 620,871 to 623,048 _0535 PP_0536: PP_0536 - conserved protein of unknown function, at 623,210 to 623,680 _0536 Position (kb) 620 621 622 623 624Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 619.888 kb on + strandat 619.888 kb on + strandat 619.888 kb on + strandat 619.888 kb on + strandat 619.889 kb on - strandat 619.889 kb on - strandat 619.889 kb on - strandat 619.893 kb on - strandat 619.893 kb on - strandat 620.026 kb on - strandat 620.026 kb on - strandat 620.026 kb on - strandat 620.026 kb on - strandat 620.131 kb on + strand, within PP_0534at 620.132 kb on - strand, within PP_0534at 620.132 kb on - strand, within PP_0534at 620.134 kb on - strand, within PP_0534at 620.134 kb on - strand, within PP_0534at 620.134 kb on - strand, within PP_0534at 620.158 kb on - strand, within PP_0534at 620.230 kb on + strand, within PP_0534at 620.230 kb on + strand, within PP_0534at 620.231 kb on - strand, within PP_0534at 620.395 kb on - strand, within PP_0534at 620.395 kb on - strand, within PP_0534at 620.564 kb on + strand, within PP_0534at 620.564 kb on + strand, within PP_0534at 620.768 kb on - strandat 620.768 kb on - strandat 620.768 kb on - strandat 620.768 kb on - strandat 620.776 kb on + strandat 620.777 kb on - strandat 620.777 kb on - strandat 621.042 kb on + strandat 621.043 kb on - strandat 621.043 kb on - strandat 621.151 kb on - strand, within PP_0535at 621.162 kb on + strand, within PP_0535at 621.162 kb on + strand, within PP_0535at 621.163 kb on - strand, within PP_0535at 621.163 kb on - strand, within PP_0535at 621.207 kb on + strand, within PP_0535at 621.207 kb on + strand, within PP_0535at 621.208 kb on - strand, within PP_0535at 621.208 kb on - strand, within PP_0535at 621.258 kb on + strand, within PP_0535at 621.271 kb on - strand, within PP_0535at 621.276 kb on + strand, within PP_0535at 621.431 kb on - strand, within PP_0535at 621.477 kb on + strand, within PP_0535at 621.478 kb on - strand, within PP_0535at 621.594 kb on + strand, within PP_0535at 621.594 kb on + strand, within PP_0535at 621.618 kb on + strand, within PP_0535at 621.618 kb on + strand, within PP_0535at 621.618 kb on + strand, within PP_0535at 621.618 kb on + strand, within PP_0535at 621.619 kb on - strand, within PP_0535at 621.619 kb on - strand, within PP_0535at 621.619 kb on - strand, within PP_0535at 621.621 kb on + strand, within PP_0535at 621.621 kb on + strand, within PP_0535at 621.621 kb on + strand, within PP_0535at 621.621 kb on + strand, within PP_0535at 621.622 kb on - strand, within PP_0535at 621.657 kb on - strand, within PP_0535at 621.780 kb on + strand, within PP_0535at 621.780 kb on + strand, within PP_0535at 621.885 kb on + strand, within PP_0535at 621.885 kb on + strand, within PP_0535at 621.885 kb on + strand, within PP_0535at 621.886 kb on - strand, within PP_0535at 621.886 kb on - strand, within PP_0535at 621.886 kb on - strand, within PP_0535at 621.891 kb on + strand, within PP_0535at 621.892 kb on - strand, within PP_0535at 621.892 kb on - strand, within PP_0535at 621.892 kb on - strand, within PP_0535at 621.969 kb on + strand, within PP_0535at 621.970 kb on - strand, within PP_0535at 621.970 kb on - strand, within PP_0535at 621.988 kb on - strand, within PP_0535at 622.044 kb on + strand, within PP_0535at 622.053 kb on + strand, within PP_0535at 622.053 kb on + strand, within PP_0535at 622.053 kb on + strand, within PP_0535at 622.110 kb on + strand, within PP_0535at 622.111 kb on - strand, within PP_0535at 622.146 kb on + strand, within PP_0535at 622.146 kb on + strand, within PP_0535at 622.146 kb on + strand, within PP_0535at 622.146 kb on + strand, within PP_0535at 622.146 kb on + strand, within PP_0535at 622.146 kb on + strand, within PP_0535at 622.146 kb on + strand, within PP_0535at 622.146 kb on + strand, within PP_0535at 622.146 kb on + strand, within PP_0535at 622.147 kb on - strand, within PP_0535at 622.147 kb on - strand, within PP_0535at 622.147 kb on - strand, within PP_0535at 622.147 kb on - strand, within PP_0535at 622.151 kb on + strand, within PP_0535at 622.152 kb on - strand, within PP_0535at 622.179 kb on + strand, within PP_0535at 622.180 kb on - strand, within PP_0535at 622.180 kb on - strand, within PP_0535at 622.270 kb on - strand, within PP_0535at 622.270 kb on - strand, within PP_0535at 622.295 kb on + strand, within PP_0535at 622.296 kb on - strand, within PP_0535at 622.296 kb on - strand, within PP_0535at 622.296 kb on - strand, within PP_0535at 622.353 kb on + strand, within PP_0535at 622.354 kb on - strand, within PP_0535at 622.380 kb on + strand, within PP_0535at 622.380 kb on + strand, within PP_0535at 622.380 kb on + strand, within PP_0535at 622.381 kb on - strand, within PP_0535at 622.381 kb on - strand, within PP_0535at 622.385 kb on + strand, within PP_0535at 622.389 kb on + strand, within PP_0535at 622.389 kb on + strand, within PP_0535at 622.390 kb on - strand, within PP_0535at 622.465 kb on - strand, within PP_0535at 622.488 kb on + strand, within PP_0535at 622.488 kb on + strand, within PP_0535at 622.488 kb on + strand, within PP_0535at 622.488 kb on + strand, within PP_0535at 622.488 kb on + strand, within PP_0535at 622.489 kb on - strand, within PP_0535at 622.489 kb on - strand, within PP_0535at 622.509 kb on - strand, within PP_0535at 622.550 kb on + strand, within PP_0535at 622.560 kb on + strand, within PP_0535at 622.560 kb on + strand, within PP_0535at 622.561 kb on - strand, within PP_0535at 622.561 kb on - strand, within PP_0535at 622.767 kb on + strand, within PP_0535at 622.767 kb on + strand, within PP_0535at 622.768 kb on - strand, within PP_0535at 622.768 kb on - strand, within PP_0535at 622.837 kb on - strandat 622.837 kb on - strandat 622.943 kb on + strandat 622.944 kb on - strandat 622.944 kb on - strandat 622.962 kb on + strandat 622.963 kb on - strandat 622.963 kb on - strandat 623.037 kb on + strandat 623.038 kb on - strandat 623.065 kb on + strandat 623.140 kb on + strandat 623.150 kb on - strandat 623.241 kb on - strandat 623.422 kb on + strand, within PP_0536at 623.491 kb on + strand, within PP_0536at 623.492 kb on - strand, within PP_0536at 623.492 kb on - strand, within PP_0536at 623.552 kb on - strand, within PP_0536at 623.594 kb on + strand, within PP_0536at 623.595 kb on - strand, within PP_0536at 623.683 kb on + strandat 623.684 kb on - strandat 623.697 kb on + strandat 623.857 kb on + strandat 623.857 kb on + strandat 623.858 kb on - strandat 623.860 kb on - strandat 623.977 kb on + strandat 624.025 kb on + strandat 624.025 kb on + strandat 624.025 kb on + strandat 624.025 kb on + strandat 624.026 kb on - strandat 624.047 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. put South MOI 1
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619,888 + -0.0
619,888 + -0.2
619,888 + -0.3
619,888 + -0.7
619,889 - -0.6
619,889 - +0.5
619,889 - -0.4
619,893 - -1.4
619,893 - -0.8
620,026 - -0.1
620,026 - -3.7
620,026 - -1.5
620,026 - -0.8
620,131 + PP_0534 0.19 -0.9
620,132 - PP_0534 0.19 -1.2
620,132 - PP_0534 0.19 -0.1
620,134 - PP_0534 0.20 -0.8
620,134 - PP_0534 0.20 -0.6
620,134 - PP_0534 0.20 -0.8
620,158 - PP_0534 0.23 -0.3
620,230 + PP_0534 0.34 -1.7
620,230 + PP_0534 0.34 -0.6
620,231 - PP_0534 0.34 -0.0
620,395 - PP_0534 0.57 -0.7
620,395 - PP_0534 0.57 +0.1
620,564 + PP_0534 0.82 -0.4
620,564 + PP_0534 0.82 -0.1
620,768 - -0.6
620,768 - +0.2
620,768 - +0.8
620,768 - -0.5
620,776 + +0.3
620,777 - +0.1
620,777 - -0.2
621,042 + -0.0
621,043 - +0.0
621,043 - +0.5
621,151 - PP_0535 0.13 +0.6
621,162 + PP_0535 0.13 +1.1
621,162 + PP_0535 0.13 +1.6
621,163 - PP_0535 0.13 +0.9
621,163 - PP_0535 0.13 -0.4
621,207 + PP_0535 0.15 +0.5
621,207 + PP_0535 0.15 -0.5
621,208 - PP_0535 0.15 -0.7
621,208 - PP_0535 0.15 -0.6
621,258 + PP_0535 0.18 -1.6
621,271 - PP_0535 0.18 +0.2
621,276 + PP_0535 0.19 +0.4
621,431 - PP_0535 0.26 -0.4
621,477 + PP_0535 0.28 +0.8
621,478 - PP_0535 0.28 -0.1
621,594 + PP_0535 0.33 +2.4
621,594 + PP_0535 0.33 -1.1
621,618 + PP_0535 0.34 -0.3
621,618 + PP_0535 0.34 +0.8
621,618 + PP_0535 0.34 +0.2
621,618 + PP_0535 0.34 +0.5
621,619 - PP_0535 0.34 +0.3
621,619 - PP_0535 0.34 -0.5
621,619 - PP_0535 0.34 -0.0
621,621 + PP_0535 0.34 -0.4
621,621 + PP_0535 0.34 -1.3
621,621 + PP_0535 0.34 -0.4
621,621 + PP_0535 0.34 +0.2
621,622 - PP_0535 0.34 +0.3
621,657 - PP_0535 0.36 +1.0
621,780 + PP_0535 0.42 -0.4
621,780 + PP_0535 0.42 -0.6
621,885 + PP_0535 0.47 -2.4
621,885 + PP_0535 0.47 +0.5
621,885 + PP_0535 0.47 -2.2
621,886 - PP_0535 0.47 +0.2
621,886 - PP_0535 0.47 +0.5
621,886 - PP_0535 0.47 +0.4
621,891 + PP_0535 0.47 -0.6
621,892 - PP_0535 0.47 +0.2
621,892 - PP_0535 0.47 +0.5
621,892 - PP_0535 0.47 +0.1
621,969 + PP_0535 0.50 -0.5
621,970 - PP_0535 0.50 +0.4
621,970 - PP_0535 0.50 +0.3
621,988 - PP_0535 0.51 +1.1
622,044 + PP_0535 0.54 +0.6
622,053 + PP_0535 0.54 +0.6
622,053 + PP_0535 0.54 -0.0
622,053 + PP_0535 0.54 +0.1
622,110 + PP_0535 0.57 -0.4
622,111 - PP_0535 0.57 -0.2
622,146 + PP_0535 0.59 -0.1
622,146 + PP_0535 0.59 +1.0
622,146 + PP_0535 0.59 +0.1
622,146 + PP_0535 0.59 -0.1
622,146 + PP_0535 0.59 -0.3
622,146 + PP_0535 0.59 -0.6
622,146 + PP_0535 0.59 -0.2
622,146 + PP_0535 0.59 -0.1
622,146 + PP_0535 0.59 -0.5
622,147 - PP_0535 0.59 +0.6
622,147 - PP_0535 0.59 +1.0
622,147 - PP_0535 0.59 +0.1
622,147 - PP_0535 0.59 +0.5
622,151 + PP_0535 0.59 +0.1
622,152 - PP_0535 0.59 -0.1
622,179 + PP_0535 0.60 +0.4
622,180 - PP_0535 0.60 +0.9
622,180 - PP_0535 0.60 -0.2
622,270 - PP_0535 0.64 -0.2
622,270 - PP_0535 0.64 -1.3
622,295 + PP_0535 0.65 -0.4
622,296 - PP_0535 0.65 -0.1
622,296 - PP_0535 0.65 +0.3
622,296 - PP_0535 0.65 +0.2
622,353 + PP_0535 0.68 -1.3
622,354 - PP_0535 0.68 -0.1
622,380 + PP_0535 0.69 -0.5
622,380 + PP_0535 0.69 -0.3
622,380 + PP_0535 0.69 +0.4
622,381 - PP_0535 0.69 +0.2
622,381 - PP_0535 0.69 -0.9
622,385 + PP_0535 0.70 +0.5
622,389 + PP_0535 0.70 -0.5
622,389 + PP_0535 0.70 +0.0
622,390 - PP_0535 0.70 +1.8
622,465 - PP_0535 0.73 +1.3
622,488 + PP_0535 0.74 +0.3
622,488 + PP_0535 0.74 -0.5
622,488 + PP_0535 0.74 -0.9
622,488 + PP_0535 0.74 -1.5
622,488 + PP_0535 0.74 +0.3
622,489 - PP_0535 0.74 -0.6
622,489 - PP_0535 0.74 -0.5
622,509 - PP_0535 0.75 +0.5
622,550 + PP_0535 0.77 -0.5
622,560 + PP_0535 0.78 -0.7
622,560 + PP_0535 0.78 +0.0
622,561 - PP_0535 0.78 +1.3
622,561 - PP_0535 0.78 -0.8
622,767 + PP_0535 0.87 +0.2
622,767 + PP_0535 0.87 -0.1
622,768 - PP_0535 0.87 +1.3
622,768 - PP_0535 0.87 -0.2
622,837 - +0.2
622,837 - +0.6
622,943 + +0.4
622,944 - -2.2
622,944 - -0.2
622,962 + +1.0
622,963 - -2.6
622,963 - -2.0
623,037 + -0.2
623,038 - +0.1
623,065 + -0.2
623,140 + -0.4
623,150 - -0.9
623,241 - +0.2
623,422 + PP_0536 0.45 -3.4
623,491 + PP_0536 0.60 -0.1
623,492 - PP_0536 0.60 +0.9
623,492 - PP_0536 0.60 -0.0
623,552 - PP_0536 0.73 -0.6
623,594 + PP_0536 0.82 +0.1
623,595 - PP_0536 0.82 -0.2
623,683 + -0.6
623,684 - +0.3
623,697 + -1.4
623,857 + -1.4
623,857 + -0.1
623,858 - -1.7
623,860 - -2.3
623,977 + -0.1
624,025 + -0.6
624,025 + -2.1
624,025 + +1.0
624,025 + +0.4
624,026 - -1.7
624,047 - +0.8

Or see this region's nucleotide sequence