Experiment: P. put South MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0533 and PP_0534 overlap by 1 nucleotides PP_0534 and PP_0535 are separated by 181 nucleotides
PP_0533: PP_0533 - histidine kinase, at 618,669 to 619,997
_0533
PP_0534: PP_0534 - putative Transcriptional regulator PfeR, at 619,997 to 620,689
_0534
PP_0535: PP_0535 - Outer membrane ferric siderophore receptor, at 620,871 to 623,048
_0535
Position (kb) 619
620
621 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 619.182 kb on + strand, within PP_0533 at 619.473 kb on + strand, within PP_0533 at 619.474 kb on - strand, within PP_0533 at 619.485 kb on + strand, within PP_0533 at 619.486 kb on - strand, within PP_0533 at 619.627 kb on + strand, within PP_0533 at 619.627 kb on + strand, within PP_0533 at 619.746 kb on + strand, within PP_0533 at 619.747 kb on - strand, within PP_0533 at 619.747 kb on - strand, within PP_0533 at 619.849 kb on + strand, within PP_0533 at 619.888 kb on + strand at 619.888 kb on + strand at 619.888 kb on + strand at 619.888 kb on + strand at 619.889 kb on - strand at 619.889 kb on - strand at 619.889 kb on - strand at 619.893 kb on - strand at 619.893 kb on - strand at 620.026 kb on - strand at 620.026 kb on - strand at 620.026 kb on - strand at 620.026 kb on - strand at 620.131 kb on + strand, within PP_0534 at 620.132 kb on - strand, within PP_0534 at 620.132 kb on - strand, within PP_0534 at 620.134 kb on - strand, within PP_0534 at 620.134 kb on - strand, within PP_0534 at 620.134 kb on - strand, within PP_0534 at 620.158 kb on - strand, within PP_0534 at 620.230 kb on + strand, within PP_0534 at 620.230 kb on + strand, within PP_0534 at 620.231 kb on - strand, within PP_0534 at 620.395 kb on - strand, within PP_0534 at 620.395 kb on - strand, within PP_0534 at 620.564 kb on + strand, within PP_0534 at 620.564 kb on + strand, within PP_0534 at 620.768 kb on - strand at 620.768 kb on - strand at 620.768 kb on - strand at 620.768 kb on - strand at 620.776 kb on + strand at 620.777 kb on - strand at 620.777 kb on - strand at 621.042 kb on + strand at 621.043 kb on - strand at 621.043 kb on - strand at 621.151 kb on - strand, within PP_0535 at 621.162 kb on + strand, within PP_0535 at 621.162 kb on + strand, within PP_0535 at 621.163 kb on - strand, within PP_0535 at 621.163 kb on - strand, within PP_0535 at 621.207 kb on + strand, within PP_0535 at 621.207 kb on + strand, within PP_0535 at 621.208 kb on - strand, within PP_0535 at 621.208 kb on - strand, within PP_0535 at 621.258 kb on + strand, within PP_0535 at 621.271 kb on - strand, within PP_0535 at 621.276 kb on + strand, within PP_0535 at 621.431 kb on - strand, within PP_0535 at 621.477 kb on + strand, within PP_0535 at 621.478 kb on - strand, within PP_0535 at 621.594 kb on + strand, within PP_0535 at 621.594 kb on + strand, within PP_0535 at 621.618 kb on + strand, within PP_0535 at 621.618 kb on + strand, within PP_0535 at 621.618 kb on + strand, within PP_0535 at 621.618 kb on + strand, within PP_0535 at 621.619 kb on - strand, within PP_0535 at 621.619 kb on - strand, within PP_0535 at 621.619 kb on - strand, within PP_0535 at 621.621 kb on + strand, within PP_0535 at 621.621 kb on + strand, within PP_0535 at 621.621 kb on + strand, within PP_0535 at 621.621 kb on + strand, within PP_0535 at 621.622 kb on - strand, within PP_0535 at 621.657 kb on - strand, within PP_0535
Per-strain Table
Position Strand Gene LocusTag Fraction P. put South MOI 1 remove 619,182 + PP_0533 0.39 +0.2 619,473 + PP_0533 0.60 -1.2 619,474 - PP_0533 0.61 +0.7 619,485 + PP_0533 0.61 -0.9 619,486 - PP_0533 0.61 +0.6 619,627 + PP_0533 0.72 -0.5 619,627 + PP_0533 0.72 -0.0 619,746 + PP_0533 0.81 +0.2 619,747 - PP_0533 0.81 +0.8 619,747 - PP_0533 0.81 -0.4 619,849 + PP_0533 0.89 +0.0 619,888 + -0.0 619,888 + -0.2 619,888 + -0.3 619,888 + -0.7 619,889 - -0.6 619,889 - +0.5 619,889 - -0.4 619,893 - -1.4 619,893 - -0.8 620,026 - -0.1 620,026 - -3.7 620,026 - -1.5 620,026 - -0.8 620,131 + PP_0534 0.19 -0.9 620,132 - PP_0534 0.19 -1.2 620,132 - PP_0534 0.19 -0.1 620,134 - PP_0534 0.20 -0.8 620,134 - PP_0534 0.20 -0.6 620,134 - PP_0534 0.20 -0.8 620,158 - PP_0534 0.23 -0.3 620,230 + PP_0534 0.34 -1.7 620,230 + PP_0534 0.34 -0.6 620,231 - PP_0534 0.34 -0.0 620,395 - PP_0534 0.57 -0.7 620,395 - PP_0534 0.57 +0.1 620,564 + PP_0534 0.82 -0.4 620,564 + PP_0534 0.82 -0.1 620,768 - -0.6 620,768 - +0.2 620,768 - +0.8 620,768 - -0.5 620,776 + +0.3 620,777 - +0.1 620,777 - -0.2 621,042 + -0.0 621,043 - +0.0 621,043 - +0.5 621,151 - PP_0535 0.13 +0.6 621,162 + PP_0535 0.13 +1.1 621,162 + PP_0535 0.13 +1.6 621,163 - PP_0535 0.13 +0.9 621,163 - PP_0535 0.13 -0.4 621,207 + PP_0535 0.15 +0.5 621,207 + PP_0535 0.15 -0.5 621,208 - PP_0535 0.15 -0.7 621,208 - PP_0535 0.15 -0.6 621,258 + PP_0535 0.18 -1.6 621,271 - PP_0535 0.18 +0.2 621,276 + PP_0535 0.19 +0.4 621,431 - PP_0535 0.26 -0.4 621,477 + PP_0535 0.28 +0.8 621,478 - PP_0535 0.28 -0.1 621,594 + PP_0535 0.33 +2.4 621,594 + PP_0535 0.33 -1.1 621,618 + PP_0535 0.34 -0.3 621,618 + PP_0535 0.34 +0.8 621,618 + PP_0535 0.34 +0.2 621,618 + PP_0535 0.34 +0.5 621,619 - PP_0535 0.34 +0.3 621,619 - PP_0535 0.34 -0.5 621,619 - PP_0535 0.34 -0.0 621,621 + PP_0535 0.34 -0.4 621,621 + PP_0535 0.34 -1.3 621,621 + PP_0535 0.34 -0.4 621,621 + PP_0535 0.34 +0.2 621,622 - PP_0535 0.34 +0.3 621,657 - PP_0535 0.36 +1.0
Or see this region's nucleotide sequence