Strain Fitness in Pseudomonas putida KT2440 around PP_0287

Experiment: P. put South MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0286 and PP_0287 overlap by 4 nucleotidesPP_0287 and PP_0288 are separated by 268 nucleotides PP_0286: PP_0286 - adenine glycosylase, at 344,535 to 345,602 _0286 PP_0287: PP_0287 - conserved exported protein of unknown function, at 345,599 to 347,845 _0287 PP_0288: PP_0288 - putative Oxalate/formate antiporter, at 348,114 to 349,775 _0288 Position (kb) 345 346 347 348Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 344.633 kb on - strandat 344.633 kb on - strandat 344.633 kb on - strandat 344.633 kb on - strandat 344.861 kb on - strand, within PP_0286at 345.026 kb on + strand, within PP_0286at 345.064 kb on + strand, within PP_0286at 345.065 kb on - strand, within PP_0286at 345.089 kb on + strand, within PP_0286at 345.111 kb on + strand, within PP_0286at 345.111 kb on + strand, within PP_0286at 345.112 kb on - strand, within PP_0286at 345.112 kb on - strand, within PP_0286at 345.112 kb on - strandat 345.160 kb on + strand, within PP_0286at 345.160 kb on + strand, within PP_0286at 345.161 kb on - strand, within PP_0286at 345.270 kb on - strand, within PP_0286at 345.355 kb on + strand, within PP_0286at 345.355 kb on + strand, within PP_0286at 345.356 kb on - strand, within PP_0286at 345.356 kb on - strand, within PP_0286at 345.356 kb on - strand, within PP_0286at 345.358 kb on + strand, within PP_0286at 345.451 kb on + strand, within PP_0286at 345.452 kb on - strand, within PP_0286at 345.452 kb on - strand, within PP_0286at 345.452 kb on - strand, within PP_0286at 345.562 kb on + strandat 345.810 kb on + strandat 345.810 kb on + strandat 345.811 kb on - strandat 345.811 kb on - strandat 345.882 kb on + strand, within PP_0287at 345.882 kb on + strand, within PP_0287at 345.882 kb on + strand, within PP_0287at 345.882 kb on - strand, within PP_0287at 345.883 kb on - strand, within PP_0287at 345.883 kb on - strand, within PP_0287at 345.883 kb on - strand, within PP_0287at 346.353 kb on + strand, within PP_0287at 346.353 kb on + strand, within PP_0287at 346.353 kb on + strand, within PP_0287at 346.353 kb on + strandat 346.354 kb on - strand, within PP_0287at 346.354 kb on - strand, within PP_0287at 346.436 kb on - strand, within PP_0287at 346.653 kb on + strand, within PP_0287at 346.681 kb on + strand, within PP_0287at 347.074 kb on + strand, within PP_0287at 347.121 kb on + strand, within PP_0287at 347.121 kb on + strand, within PP_0287at 347.122 kb on - strand, within PP_0287at 347.201 kb on - strand, within PP_0287at 347.277 kb on + strand, within PP_0287at 347.277 kb on + strand, within PP_0287at 347.277 kb on + strand, within PP_0287at 347.277 kb on + strand, within PP_0287at 347.278 kb on - strand, within PP_0287at 347.278 kb on - strand, within PP_0287at 347.278 kb on - strand, within PP_0287at 347.305 kb on - strand, within PP_0287at 347.519 kb on + strand, within PP_0287at 347.519 kb on + strand, within PP_0287at 347.520 kb on - strand, within PP_0287at 347.520 kb on - strand, within PP_0287at 347.520 kb on - strand, within PP_0287at 347.743 kb on - strandat 347.860 kb on - strandat 347.888 kb on + strandat 347.889 kb on - strandat 347.889 kb on - strandat 347.889 kb on - strandat 347.890 kb on + strandat 347.890 kb on + strandat 347.891 kb on - strandat 347.891 kb on - strandat 347.891 kb on - strandat 347.917 kb on + strandat 347.918 kb on - strandat 347.918 kb on - strandat 347.924 kb on - strandat 347.931 kb on + strandat 347.932 kb on - strandat 347.932 kb on - strandat 347.943 kb on - strandat 347.950 kb on + strandat 347.961 kb on - strandat 347.961 kb on - strandat 347.961 kb on - strandat 347.977 kb on + strandat 347.977 kb on + strandat 347.977 kb on + strandat 347.977 kb on + strandat 347.977 kb on + strandat 347.977 kb on + strandat 347.978 kb on - strandat 347.978 kb on - strandat 347.980 kb on + strandat 347.980 kb on + strandat 347.981 kb on - strandat 348.021 kb on - strandat 348.096 kb on - strandat 348.096 kb on - strandat 348.096 kb on - strandat 348.179 kb on - strandat 348.256 kb on - strandat 348.396 kb on + strand, within PP_0288at 348.396 kb on + strand, within PP_0288at 348.396 kb on + strand, within PP_0288at 348.396 kb on + strand, within PP_0288at 348.396 kb on + strand, within PP_0288at 348.396 kb on + strand, within PP_0288at 348.396 kb on + strand, within PP_0288at 348.396 kb on + strand, within PP_0288at 348.397 kb on - strand, within PP_0288at 348.397 kb on - strand, within PP_0288at 348.397 kb on - strand, within PP_0288at 348.397 kb on - strand, within PP_0288at 348.397 kb on - strand, within PP_0288at 348.397 kb on - strand, within PP_0288at 348.397 kb on - strand, within PP_0288at 348.398 kb on + strand, within PP_0288at 348.526 kb on + strand, within PP_0288at 348.527 kb on - strand, within PP_0288at 348.603 kb on + strand, within PP_0288at 348.603 kb on + strand, within PP_0288at 348.603 kb on + strand, within PP_0288at 348.604 kb on - strand, within PP_0288at 348.725 kb on + strand, within PP_0288at 348.793 kb on - strand, within PP_0288at 348.833 kb on - strand, within PP_0288

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P. put South MOI 1
remove
344,633 - -0.3
344,633 - -0.2
344,633 - +1.0
344,633 - +0.4
344,861 - PP_0286 0.31 -0.2
345,026 + PP_0286 0.46 -2.2
345,064 + PP_0286 0.50 -1.0
345,065 - PP_0286 0.50 -0.4
345,089 + PP_0286 0.52 +2.4
345,111 + PP_0286 0.54 +0.7
345,111 + PP_0286 0.54 -1.0
345,112 - PP_0286 0.54 +0.4
345,112 - PP_0286 0.54 -0.5
345,112 - +2.2
345,160 + PP_0286 0.59 -1.9
345,160 + PP_0286 0.59 -0.3
345,161 - PP_0286 0.59 -0.0
345,270 - PP_0286 0.69 -1.2
345,355 + PP_0286 0.77 -1.1
345,355 + PP_0286 0.77 +0.1
345,356 - PP_0286 0.77 -0.0
345,356 - PP_0286 0.77 +0.3
345,356 - PP_0286 0.77 +0.3
345,358 + PP_0286 0.77 +0.2
345,451 + PP_0286 0.86 -2.3
345,452 - PP_0286 0.86 -0.8
345,452 - PP_0286 0.86 -0.2
345,452 - PP_0286 0.86 -0.1
345,562 + -0.3
345,810 + -1.0
345,810 + +0.0
345,811 - -1.2
345,811 - +0.9
345,882 + PP_0287 0.13 +1.6
345,882 + PP_0287 0.13 -0.8
345,882 + PP_0287 0.13 -0.6
345,882 - PP_0287 0.13 -3.3
345,883 - PP_0287 0.13 -1.8
345,883 - PP_0287 0.13 -2.9
345,883 - PP_0287 0.13 -1.1
346,353 + PP_0287 0.34 +1.9
346,353 + PP_0287 0.34 -3.1
346,353 + PP_0287 0.34 -2.6
346,353 + +0.0
346,354 - PP_0287 0.34 -2.8
346,354 - PP_0287 0.34 +0.8
346,436 - PP_0287 0.37 +1.2
346,653 + PP_0287 0.47 -0.8
346,681 + PP_0287 0.48 -2.9
347,074 + PP_0287 0.66 +0.1
347,121 + PP_0287 0.68 -0.0
347,121 + PP_0287 0.68 -1.0
347,122 - PP_0287 0.68 -0.5
347,201 - PP_0287 0.71 -2.5
347,277 + PP_0287 0.75 -1.6
347,277 + PP_0287 0.75 -0.7
347,277 + PP_0287 0.75 -0.4
347,277 + PP_0287 0.75 +1.4
347,278 - PP_0287 0.75 -1.0
347,278 - PP_0287 0.75 +0.7
347,278 - PP_0287 0.75 -2.4
347,305 - PP_0287 0.76 -1.4
347,519 + PP_0287 0.85 -2.5
347,519 + PP_0287 0.85 +1.2
347,520 - PP_0287 0.85 -3.1
347,520 - PP_0287 0.85 -2.2
347,520 - PP_0287 0.85 -1.3
347,743 - -1.8
347,860 - -0.7
347,888 + +0.0
347,889 - -1.6
347,889 - -1.7
347,889 - -0.1
347,890 + -0.1
347,890 + -1.2
347,891 - -1.8
347,891 - +0.0
347,891 - -3.0
347,917 + -0.0
347,918 - -1.1
347,918 - -3.6
347,924 - +1.0
347,931 + -0.4
347,932 - -0.4
347,932 - -0.5
347,943 - -0.9
347,950 + -0.5
347,961 - +0.4
347,961 - -0.0
347,961 - -4.0
347,977 + -1.1
347,977 + -1.3
347,977 + -0.7
347,977 + -2.8
347,977 + -0.1
347,977 + -1.2
347,978 - -0.3
347,978 - -0.3
347,980 + -0.4
347,980 + -0.6
347,981 - -1.1
348,021 - -0.3
348,096 - -0.9
348,096 - -2.6
348,096 - -0.0
348,179 - -1.2
348,256 - -0.6
348,396 + PP_0288 0.17 -1.0
348,396 + PP_0288 0.17 -0.7
348,396 + PP_0288 0.17 +0.1
348,396 + PP_0288 0.17 -0.6
348,396 + PP_0288 0.17 -0.2
348,396 + PP_0288 0.17 -2.4
348,396 + PP_0288 0.17 +0.2
348,396 + PP_0288 0.17 -0.1
348,397 - PP_0288 0.17 +0.4
348,397 - PP_0288 0.17 +0.1
348,397 - PP_0288 0.17 -0.3
348,397 - PP_0288 0.17 -4.7
348,397 - PP_0288 0.17 +1.8
348,397 - PP_0288 0.17 +0.2
348,397 - PP_0288 0.17 -0.5
348,398 + PP_0288 0.17 +0.1
348,526 + PP_0288 0.25 -0.2
348,527 - PP_0288 0.25 -0.1
348,603 + PP_0288 0.29 -0.6
348,603 + PP_0288 0.29 +0.1
348,603 + PP_0288 0.29 +0.2
348,604 - PP_0288 0.29 +1.6
348,725 + PP_0288 0.37 +0.3
348,793 - PP_0288 0.41 -0.7
348,833 - PP_0288 0.43 -1.8

Or see this region's nucleotide sequence