Strain Fitness in Escherichia coli BW25113 around b3159

Experiment: LB Time24hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyhbU and yhbV are separated by 8 nucleotidesyhbV and yhbW are separated by 80 nucleotides b3158: yhbU - predicted peptidase (collagenase-like) (NCBI), at 3,299,507 to 3,300,502 yhbU b3159: yhbV - orf, hypothetical protein (VIMSS), at 3,300,511 to 3,301,389 yhbV b3160: yhbW - predicted enzyme (NCBI), at 3,301,470 to 3,302,477 yhbW Position (kb) 3300 3301 3302Strain fitness (log2 ratio) -1 0 1at 3299.515 kb on + strandat 3299.515 kb on + strandat 3299.550 kb on - strandat 3299.626 kb on + strand, within yhbUat 3299.785 kb on - strand, within yhbUat 3299.785 kb on - strand, within yhbUat 3299.809 kb on - strand, within yhbUat 3299.857 kb on + strand, within yhbUat 3299.860 kb on - strand, within yhbUat 3299.968 kb on + strand, within yhbUat 3299.968 kb on + strand, within yhbUat 3299.968 kb on + strand, within yhbUat 3299.981 kb on - strand, within yhbUat 3300.162 kb on + strand, within yhbUat 3300.216 kb on - strand, within yhbUat 3300.216 kb on - strand, within yhbUat 3300.225 kb on - strand, within yhbUat 3300.240 kb on - strand, within yhbUat 3300.349 kb on - strand, within yhbUat 3300.349 kb on - strand, within yhbUat 3300.388 kb on + strand, within yhbUat 3300.396 kb on - strand, within yhbUat 3300.396 kb on - strand, within yhbUat 3300.396 kb on - strand, within yhbUat 3300.396 kb on - strand, within yhbUat 3300.396 kb on - strand, within yhbUat 3300.451 kb on + strandat 3300.451 kb on + strandat 3300.451 kb on + strandat 3300.451 kb on + strandat 3300.476 kb on + strandat 3300.532 kb on + strandat 3300.540 kb on - strandat 3300.541 kb on - strandat 3300.543 kb on - strandat 3300.543 kb on - strandat 3300.545 kb on + strandat 3300.630 kb on - strand, within yhbVat 3300.632 kb on - strand, within yhbVat 3300.729 kb on + strand, within yhbVat 3300.742 kb on - strand, within yhbVat 3300.742 kb on - strand, within yhbVat 3300.742 kb on - strand, within yhbVat 3300.761 kb on + strand, within yhbVat 3300.861 kb on + strand, within yhbVat 3300.917 kb on - strand, within yhbVat 3300.922 kb on - strand, within yhbVat 3300.957 kb on + strand, within yhbVat 3300.993 kb on + strand, within yhbVat 3300.993 kb on + strand, within yhbVat 3301.040 kb on - strand, within yhbVat 3301.094 kb on - strand, within yhbVat 3301.094 kb on - strand, within yhbVat 3301.100 kb on + strand, within yhbVat 3301.100 kb on + strand, within yhbVat 3301.230 kb on + strand, within yhbVat 3301.230 kb on + strand, within yhbVat 3301.245 kb on + strand, within yhbVat 3301.245 kb on + strand, within yhbVat 3301.286 kb on - strand, within yhbVat 3301.286 kb on - strand, within yhbVat 3301.305 kb on - strandat 3301.305 kb on - strandat 3301.467 kb on + strandat 3301.666 kb on + strand, within yhbWat 3301.746 kb on - strand, within yhbWat 3301.751 kb on + strand, within yhbWat 3301.751 kb on + strand, within yhbWat 3301.768 kb on + strand, within yhbWat 3301.770 kb on - strand, within yhbWat 3301.774 kb on + strand, within yhbWat 3301.782 kb on - strand, within yhbWat 3301.794 kb on + strand, within yhbWat 3301.814 kb on - strand, within yhbWat 3301.816 kb on - strand, within yhbWat 3301.898 kb on - strand, within yhbWat 3301.986 kb on + strand, within yhbWat 3301.986 kb on + strand, within yhbWat 3302.135 kb on - strand, within yhbWat 3302.191 kb on - strand, within yhbWat 3302.206 kb on + strand, within yhbWat 3302.206 kb on + strand, within yhbWat 3302.281 kb on + strand, within yhbWat 3302.296 kb on - strand, within yhbWat 3302.318 kb on + strand, within yhbWat 3302.318 kb on - strand, within yhbWat 3302.349 kb on + strand, within yhbW

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Time24hr
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3,299,515 + -0.1
3,299,515 + -0.1
3,299,550 - -0.3
3,299,626 + yhbU b3158 0.12 -0.8
3,299,785 - yhbU b3158 0.28 -0.4
3,299,785 - yhbU b3158 0.28 -0.5
3,299,809 - yhbU b3158 0.30 -0.0
3,299,857 + yhbU b3158 0.35 -0.5
3,299,860 - yhbU b3158 0.35 -0.1
3,299,968 + yhbU b3158 0.46 -0.6
3,299,968 + yhbU b3158 0.46 -1.1
3,299,968 + yhbU b3158 0.46 -0.3
3,299,981 - yhbU b3158 0.48 +0.2
3,300,162 + yhbU b3158 0.66 -0.6
3,300,216 - yhbU b3158 0.71 -1.2
3,300,216 - yhbU b3158 0.71 -0.1
3,300,225 - yhbU b3158 0.72 -0.4
3,300,240 - yhbU b3158 0.74 -0.5
3,300,349 - yhbU b3158 0.85 -0.7
3,300,349 - yhbU b3158 0.85 -0.7
3,300,388 + yhbU b3158 0.88 -0.6
3,300,396 - yhbU b3158 0.89 -0.2
3,300,396 - yhbU b3158 0.89 -1.2
3,300,396 - yhbU b3158 0.89 -0.3
3,300,396 - yhbU b3158 0.89 -0.3
3,300,396 - yhbU b3158 0.89 -0.2
3,300,451 + -0.2
3,300,451 + +0.3
3,300,451 + -1.2
3,300,451 + -0.5
3,300,476 + +0.4
3,300,532 + +0.1
3,300,540 - -0.3
3,300,541 - -0.2
3,300,543 - -0.2
3,300,543 - -0.5
3,300,545 + -0.2
3,300,630 - yhbV b3159 0.14 -0.5
3,300,632 - yhbV b3159 0.14 -0.6
3,300,729 + yhbV b3159 0.25 -0.5
3,300,742 - yhbV b3159 0.26 -0.2
3,300,742 - yhbV b3159 0.26 +0.0
3,300,742 - yhbV b3159 0.26 +0.2
3,300,761 + yhbV b3159 0.28 -0.9
3,300,861 + yhbV b3159 0.40 -0.4
3,300,917 - yhbV b3159 0.46 -0.5
3,300,922 - yhbV b3159 0.47 -0.3
3,300,957 + yhbV b3159 0.51 -0.9
3,300,993 + yhbV b3159 0.55 -0.5
3,300,993 + yhbV b3159 0.55 -0.4
3,301,040 - yhbV b3159 0.60 +0.1
3,301,094 - yhbV b3159 0.66 -1.0
3,301,094 - yhbV b3159 0.66 -0.2
3,301,100 + yhbV b3159 0.67 +0.2
3,301,100 + yhbV b3159 0.67 -0.5
3,301,230 + yhbV b3159 0.82 -0.7
3,301,230 + yhbV b3159 0.82 -0.2
3,301,245 + yhbV b3159 0.84 -0.2
3,301,245 + yhbV b3159 0.84 +0.0
3,301,286 - yhbV b3159 0.88 -0.6
3,301,286 - yhbV b3159 0.88 -0.8
3,301,305 - -0.2
3,301,305 - -1.0
3,301,467 + +0.3
3,301,666 + yhbW b3160 0.19 -0.0
3,301,746 - yhbW b3160 0.27 +1.2
3,301,751 + yhbW b3160 0.28 +0.1
3,301,751 + yhbW b3160 0.28 +0.3
3,301,768 + yhbW b3160 0.30 +0.7
3,301,770 - yhbW b3160 0.30 +0.2
3,301,774 + yhbW b3160 0.30 +0.2
3,301,782 - yhbW b3160 0.31 -0.0
3,301,794 + yhbW b3160 0.32 +0.3
3,301,814 - yhbW b3160 0.34 +0.3
3,301,816 - yhbW b3160 0.34 -0.0
3,301,898 - yhbW b3160 0.42 +0.2
3,301,986 + yhbW b3160 0.51 -0.0
3,301,986 + yhbW b3160 0.51 +0.4
3,302,135 - yhbW b3160 0.66 +0.0
3,302,191 - yhbW b3160 0.72 +0.6
3,302,206 + yhbW b3160 0.73 +0.2
3,302,206 + yhbW b3160 0.73 -0.2
3,302,281 + yhbW b3160 0.80 +0.5
3,302,296 - yhbW b3160 0.82 +0.4
3,302,318 + yhbW b3160 0.84 +0.0
3,302,318 - yhbW b3160 0.84 -0.4
3,302,349 + yhbW b3160 0.87 +0.0

Or see this region's nucleotide sequence