Strain Fitness in Escherichia coli BW25113 around b2633

Experiment: LB + carbenicillin Time9hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfjP and yfjQ are separated by 91 nucleotidesyfjQ and yfjR are separated by 216 nucleotidesyfjR and ypjK are separated by 40 nucleotides b2632: yfjP - CP4-57 prophage; predicted GTP-binding protein (NCBI), at 2,765,732 to 2,766,595 yfjP b2633: yfjQ - CP4-57 prophage; predicted protein (NCBI), at 2,766,687 to 2,767,508 yfjQ b2634: yfjR - CP4-57 prophage; predicted DNA-binding transcriptional regulator (NCBI), at 2,767,725 to 2,768,426 yfjR b2635: ypjK - CP4-57 prophage; predicted inner membrane protein (NCBI), at 2,768,467 to 2,768,703 ypjK Position (kb) 2766 2767 2768Strain fitness (log2 ratio) -2 -1 0 1 2at 2765.991 kb on - strand, within yfjPat 2765.991 kb on - strand, within yfjPat 2766.049 kb on + strand, within yfjPat 2766.057 kb on - strand, within yfjPat 2766.100 kb on + strand, within yfjPat 2766.181 kb on - strand, within yfjPat 2766.201 kb on - strand, within yfjPat 2766.201 kb on - strand, within yfjPat 2766.216 kb on - strand, within yfjPat 2766.216 kb on - strand, within yfjPat 2766.395 kb on + strand, within yfjPat 2766.395 kb on + strand, within yfjPat 2766.395 kb on + strand, within yfjPat 2766.396 kb on + strand, within yfjPat 2766.396 kb on + strand, within yfjPat 2766.494 kb on - strand, within yfjPat 2766.677 kb on - strandat 2766.679 kb on + strandat 2766.679 kb on + strandat 2766.741 kb on + strandat 2766.779 kb on - strand, within yfjQat 2766.816 kb on + strand, within yfjQat 2766.905 kb on - strand, within yfjQat 2767.046 kb on - strand, within yfjQat 2767.051 kb on - strand, within yfjQat 2767.051 kb on - strand, within yfjQat 2767.051 kb on - strand, within yfjQat 2767.055 kb on + strand, within yfjQat 2767.134 kb on - strand, within yfjQat 2767.150 kb on - strand, within yfjQat 2767.229 kb on - strand, within yfjQat 2767.328 kb on - strand, within yfjQat 2767.342 kb on - strand, within yfjQat 2767.342 kb on - strand, within yfjQat 2767.420 kb on + strand, within yfjQat 2767.519 kb on + strandat 2767.563 kb on + strandat 2767.605 kb on + strandat 2767.649 kb on + strandat 2767.658 kb on - strandat 2767.904 kb on + strand, within yfjRat 2768.029 kb on - strand, within yfjRat 2768.215 kb on + strand, within yfjRat 2768.258 kb on - strand, within yfjRat 2768.258 kb on - strand, within yfjRat 2768.388 kb on - strandat 2768.429 kb on - strandat 2768.429 kb on - strandat 2768.437 kb on + strandat 2768.445 kb on - strandat 2768.460 kb on - strandat 2768.470 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB + carbenicillin Time9hr
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2,765,991 - yfjP b2632 0.30 +1.9
2,765,991 - yfjP b2632 0.30 -1.2
2,766,049 + yfjP b2632 0.37 -0.6
2,766,057 - yfjP b2632 0.38 +0.6
2,766,100 + yfjP b2632 0.43 -0.4
2,766,181 - yfjP b2632 0.52 +0.2
2,766,201 - yfjP b2632 0.54 +0.3
2,766,201 - yfjP b2632 0.54 -0.2
2,766,216 - yfjP b2632 0.56 +0.2
2,766,216 - yfjP b2632 0.56 +0.7
2,766,395 + yfjP b2632 0.77 +0.2
2,766,395 + yfjP b2632 0.77 +0.0
2,766,395 + yfjP b2632 0.77 +0.3
2,766,396 + yfjP b2632 0.77 -0.0
2,766,396 + yfjP b2632 0.77 +0.0
2,766,494 - yfjP b2632 0.88 -0.2
2,766,677 - +0.1
2,766,679 + +0.8
2,766,679 + +0.3
2,766,741 + +0.4
2,766,779 - yfjQ b2633 0.11 +0.1
2,766,816 + yfjQ b2633 0.16 +0.4
2,766,905 - yfjQ b2633 0.27 +0.4
2,767,046 - yfjQ b2633 0.44 +0.3
2,767,051 - yfjQ b2633 0.44 +0.6
2,767,051 - yfjQ b2633 0.44 +0.2
2,767,051 - yfjQ b2633 0.44 +0.6
2,767,055 + yfjQ b2633 0.45 -0.1
2,767,134 - yfjQ b2633 0.54 +0.1
2,767,150 - yfjQ b2633 0.56 +0.0
2,767,229 - yfjQ b2633 0.66 +1.0
2,767,328 - yfjQ b2633 0.78 +0.6
2,767,342 - yfjQ b2633 0.80 +0.5
2,767,342 - yfjQ b2633 0.80 +0.7
2,767,420 + yfjQ b2633 0.89 +0.1
2,767,519 + +0.5
2,767,563 + -1.8
2,767,605 + -0.2
2,767,649 + +0.4
2,767,658 - -0.3
2,767,904 + yfjR b2634 0.25 +0.0
2,768,029 - yfjR b2634 0.43 +0.3
2,768,215 + yfjR b2634 0.70 -0.2
2,768,258 - yfjR b2634 0.76 +0.0
2,768,258 - yfjR b2634 0.76 -0.1
2,768,388 - -0.4
2,768,429 - -0.1
2,768,429 - -0.2
2,768,437 + +0.1
2,768,445 - +0.3
2,768,460 - +0.6
2,768,470 - -0.5

Or see this region's nucleotide sequence