Strain Fitness in Escherichia coli BW25113 around b3775

Experiment: LB + carbenicillin Time48hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB + carbenicillin Time48hr
3,956,597	+	ilvC	b3774	0.41	+0.3
3,956,670	-	ilvC	b3774	0.46	+0.3
3,956,676	+	ilvC	b3774	0.46	-0.0
3,956,680	-	ilvC	b3774	0.47	-0.1
3,956,700	-	ilvC	b3774	0.48	+0.2
3,956,775	+	ilvC	b3774	0.53	+0.2
3,956,798	+	ilvC	b3774	0.55	+0.2
3,956,798	+	ilvC	b3774	0.55	+0.1
3,956,809	+	ilvC	b3774	0.55	+0.7
3,956,809	+	ilvC	b3774	0.55	+0.3
3,956,821	+	ilvC	b3774	0.56	+1.8
3,956,821	+	ilvC	b3774	0.56	-0.1
3,956,846	+	ilvC	b3774	0.58	+0.1
3,956,854	-	ilvC	b3774	0.58	-0.0
3,956,854	-	ilvC	b3774	0.58	-0.1
3,956,874	+	ilvC	b3774	0.60	+0.3
3,956,874	-	ilvC	b3774	0.60	-0.1
3,956,949	-	ilvC	b3774	0.65	+0.2
3,956,979	-	ilvC	b3774	0.67	+0.4
3,956,979	-	ilvC	b3774	0.67	-0.1
3,957,030	-	ilvC	b3774	0.70	+0.8
3,957,060	-	ilvC	b3774	0.72	+0.2
3,957,136	+	ilvC	b3774	0.77	+0.2
3,957,142	-	ilvC	b3774	0.78	-0.0
3,957,178	-	ilvC	b3774	0.80	+0.8
3,957,225	+	ilvC	b3774	0.83	+0.3
3,957,241	+	ilvC	b3774	0.85	-0.3
3,957,264	+	ilvC	b3774	0.86	+0.3
3,957,264	+	ilvC	b3774	0.86	-0.5
3,957,269	-	ilvC	b3774	0.86	+0.3
3,957,272	+	ilvC	b3774	0.87	-0.2
3,957,272	-	ilvC	b3774	0.87	+0.5
3,957,312	+	ilvC	b3774	0.89	+0.8
3,957,319	+	ilvC	b3774	0.90	+0.2
3,957,319	+	ilvC	b3774	0.90	-0.0
3,957,365	+				-0.2
3,957,365	+				-0.0
3,957,400	+				+0.1
3,957,400	+				-0.2
3,957,420	-				+0.0
3,957,426	+				+0.5
3,957,439	+				+0.2
3,957,494	+				+0.0
3,957,498	+				+0.6
3,957,498	+				-0.2
3,957,500	+				-0.5
3,957,508	-				+0.4
3,957,559	-				+0.4
3,957,572	-				+0.2
3,957,572	-				+0.1
3,957,580	-				-0.2
3,957,581	+				-0.4
3,957,602	+	ppiC	b3775	0.17	+0.4
3,957,606	-	ppiC	b3775	0.18	+0.0
3,957,678	-	ppiC	b3775	0.44	+0.7
3,957,692	-	ppiC	b3775	0.49	+0.5
3,957,692	-	ppiC	b3775	0.49	+0.6
3,957,765	-	ppiC	b3775	0.74	-0.1
3,957,767	+	ppiC	b3775	0.75	+0.3
3,957,767	+	ppiC	b3775	0.75	+0.6
3,957,838	+				+0.1
3,957,838	+				+0.0
3,957,842	+				+0.2
3,957,842	+				+0.1
3,957,842	+				-0.4
3,957,916	-				+0.9
3,957,916	-				+0.4
3,957,922	+				+0.0
3,957,931	-				+0.2
3,957,966	-				-0.4
3,957,966	-				+0.0
3,957,999	-				+0.2
3,958,000	+				-0.1
3,958,006	-				+0.2
3,958,053	+				+0.2
3,958,053	+				+0.1
3,958,073	-				+0.1
3,958,080	+	yifN	b3777	0.10	+0.6
3,958,082	+	yifN	b3777	0.10	+0.3
3,958,088	-	yifN	b3777	0.12	+0.1
3,958,094	-	yifN	b3777	0.13	-0.1
3,958,106	-	yifN	b3777	0.16	+0.2
3,958,106	-	yifN	b3777	0.16	+0.4
3,958,111	+	yifN	b3777	0.17	+0.1
3,958,113	-	yifN	b3777	0.17	+0.0
3,958,113	-	yifN	b3777	0.17	-0.2
3,958,115	+	yifN	b3777	0.18	-0.5
3,958,126	+	yifN	b3777	0.20	-0.1
3,958,135	-	yifN	b3777	0.22	+0.0
3,958,135	-	yifN	b3777	0.22	+0.1
3,958,137	-	yifN	b3777	0.23	+0.2
3,958,141	+	yifN	b3777	0.24	+0.7
3,958,144	-	yifN	b3777	0.24	+0.1
3,958,154	-	yifN	b3777	0.27	-0.3
3,958,177	-	yifN	b3777	0.32	-0.1
3,958,185	-	yifN	b3777	0.33	+0.6
3,958,191	-	yifN	b3777	0.35	+0.2
3,958,191	-	yifN	b3777	0.35	+0.6
3,958,295	-	yifN	b3777	0.58	-0.2
3,958,307	-	yifN	b3777	0.61	-0.5
3,958,352	+	yifN	b3777	0.71	+0.5
3,958,391	-	yifN	b3777	0.79	-0.4
3,958,391	-	yifN	b3777	0.79	+0.1
3,958,393	-	yifN	b3777	0.80	+0.5
3,958,403	-	yifN	b3777	0.82	+0.3
3,958,403	-	yifN	b3777	0.82	+0.2
3,958,419	+	yifN	b3777	0.86	+0.4
3,958,435	-	yifN	b3777	0.89	+0.0
3,958,435	-	yifN	b3777	0.89	-0.3
3,958,459	+				-0.6
3,958,483	+				-0.2
3,958,529	+				+0.2
3,958,659	+				-0.0
3,958,659	+				-0.2
3,958,705	+				+0.4