Strain Fitness in Pseudomonas putida KT2440 around PP_5717

Experiment: No phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4882 and PP_5717 are separated by 660 nucleotidesPP_5717 and PP_4885 overlap by 4 nucleotidesPP_4885 and PP_4886 are separated by 9 nucleotides PP_4882: PP_4882 - Iron ABC transporter, permease protein, at 5,550,772 to 5,552,337 _4882 PP_5717: PP_5717 - conserved protein of unknown function, at 5,552,998 to 5,553,372 _5717 PP_4885: PP_4885 - conserved protein of unknown function, at 5,553,369 to 5,554,340 _4885 PP_4886: PP_4886 - conserved protein of unknown function, at 5,554,350 to 5,554,895 _4886 Position (kb) 5552 5553 5554Strain fitness (log2 ratio) -1 0 1 2at 5552.299 kb on + strandat 5552.299 kb on + strandat 5552.300 kb on - strandat 5552.452 kb on + strandat 5552.455 kb on + strandat 5552.456 kb on - strandat 5552.456 kb on - strandat 5552.523 kb on + strandat 5552.569 kb on - strandat 5552.593 kb on + strandat 5552.680 kb on + strandat 5552.695 kb on + strandat 5552.696 kb on - strandat 5552.696 kb on - strandat 5552.699 kb on + strandat 5552.727 kb on + strandat 5552.728 kb on - strandat 5552.728 kb on - strandat 5552.742 kb on + strandat 5552.789 kb on + strandat 5552.789 kb on + strandat 5552.790 kb on - strandat 5552.812 kb on - strandat 5552.849 kb on + strandat 5552.999 kb on + strandat 5553.009 kb on - strandat 5553.125 kb on - strand, within PP_5717at 5553.219 kb on - strand, within PP_5717at 5553.330 kb on + strand, within PP_5717at 5553.331 kb on - strand, within PP_5717at 5553.441 kb on - strandat 5553.501 kb on - strand, within PP_4885at 5553.504 kb on + strand, within PP_4885at 5553.519 kb on + strand, within PP_4885at 5553.520 kb on - strand, within PP_4885at 5553.520 kb on - strand, within PP_4885at 5553.531 kb on + strand, within PP_4885at 5553.562 kb on - strand, within PP_4885at 5553.598 kb on + strand, within PP_4885at 5553.687 kb on + strand, within PP_4885at 5553.688 kb on - strand, within PP_4885at 5553.691 kb on + strand, within PP_4885at 5553.691 kb on + strand, within PP_4885at 5553.692 kb on - strand, within PP_4885at 5553.789 kb on + strand, within PP_4885at 5553.789 kb on + strand, within PP_4885at 5553.792 kb on - strand, within PP_4885at 5553.842 kb on + strand, within PP_4885at 5553.843 kb on - strand, within PP_4885at 5553.843 kb on - strand, within PP_4885at 5553.930 kb on - strand, within PP_4885at 5553.937 kb on + strand, within PP_4885at 5553.958 kb on - strand, within PP_4885at 5553.980 kb on + strand, within PP_4885at 5553.996 kb on - strand, within PP_4885at 5554.011 kb on - strand, within PP_4885at 5554.011 kb on - strand, within PP_4885at 5554.011 kb on - strand, within PP_4885at 5554.044 kb on + strand, within PP_4885at 5554.044 kb on + strand, within PP_4885at 5554.045 kb on - strand, within PP_4885at 5554.119 kb on + strand, within PP_4885at 5554.119 kb on + strand, within PP_4885at 5554.119 kb on + strand, within PP_4885at 5554.119 kb on + strand, within PP_4885at 5554.119 kb on + strand, within PP_4885at 5554.119 kb on + strand, within PP_4885at 5554.119 kb on + strand, within PP_4885at 5554.120 kb on - strand, within PP_4885at 5554.120 kb on - strand, within PP_4885at 5554.120 kb on - strand, within PP_4885at 5554.121 kb on + strand, within PP_4885at 5554.126 kb on - strand, within PP_4885at 5554.126 kb on - strand, within PP_4885at 5554.133 kb on + strand, within PP_4885at 5554.160 kb on + strand, within PP_4885at 5554.160 kb on + strand, within PP_4885at 5554.210 kb on - strand, within PP_4885at 5554.343 kb on + strandat 5554.343 kb on + strandat 5554.343 kb on + strandat 5554.344 kb on - strandat 5554.344 kb on - strandat 5554.344 kb on - strandat 5554.344 kb on - strandat 5554.344 kb on - strandat 5554.344 kb on - strandat 5554.346 kb on + strandat 5554.346 kb on + strandat 5554.347 kb on - strandat 5554.357 kb on + strandat 5554.357 kb on + strandat 5554.357 kb on + strandat 5554.357 kb on + strandat 5554.358 kb on - strandat 5554.358 kb on - strandat 5554.358 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage control
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5,552,299 + -0.7
5,552,299 + +0.3
5,552,300 - +0.2
5,552,452 + -0.3
5,552,455 + +0.2
5,552,456 - -0.2
5,552,456 - +0.1
5,552,523 + -0.6
5,552,569 - -0.5
5,552,593 + +0.9
5,552,680 + -0.1
5,552,695 + +0.2
5,552,696 - -0.1
5,552,696 - +0.5
5,552,699 + +0.4
5,552,727 + +0.5
5,552,728 - -0.6
5,552,728 - +0.9
5,552,742 + +0.5
5,552,789 + +0.2
5,552,789 + -0.7
5,552,790 - -0.7
5,552,812 - +0.0
5,552,849 + +0.1
5,552,999 + +0.4
5,553,009 - -0.8
5,553,125 - PP_5717 0.34 +0.9
5,553,219 - PP_5717 0.59 -0.0
5,553,330 + PP_5717 0.89 -1.1
5,553,331 - PP_5717 0.89 +0.6
5,553,441 - +0.4
5,553,501 - PP_4885 0.14 -0.0
5,553,504 + PP_4885 0.14 -0.5
5,553,519 + PP_4885 0.15 +1.0
5,553,520 - PP_4885 0.16 +0.0
5,553,520 - PP_4885 0.16 +0.1
5,553,531 + PP_4885 0.17 +0.0
5,553,562 - PP_4885 0.20 +0.6
5,553,598 + PP_4885 0.24 +2.1
5,553,687 + PP_4885 0.33 +0.1
5,553,688 - PP_4885 0.33 -0.4
5,553,691 + PP_4885 0.33 +0.0
5,553,691 + PP_4885 0.33 +0.6
5,553,692 - PP_4885 0.33 -0.7
5,553,789 + PP_4885 0.43 -0.5
5,553,789 + PP_4885 0.43 -0.7
5,553,792 - PP_4885 0.44 +0.2
5,553,842 + PP_4885 0.49 -0.4
5,553,843 - PP_4885 0.49 -0.2
5,553,843 - PP_4885 0.49 -0.1
5,553,930 - PP_4885 0.58 +0.0
5,553,937 + PP_4885 0.58 -0.4
5,553,958 - PP_4885 0.61 -0.2
5,553,980 + PP_4885 0.63 +0.4
5,553,996 - PP_4885 0.65 +1.1
5,554,011 - PP_4885 0.66 +0.4
5,554,011 - PP_4885 0.66 -0.2
5,554,011 - PP_4885 0.66 +0.4
5,554,044 + PP_4885 0.69 +0.3
5,554,044 + PP_4885 0.69 +0.9
5,554,045 - PP_4885 0.70 +0.2
5,554,119 + PP_4885 0.77 -0.1
5,554,119 + PP_4885 0.77 +0.3
5,554,119 + PP_4885 0.77 -0.1
5,554,119 + PP_4885 0.77 +0.5
5,554,119 + PP_4885 0.77 +0.2
5,554,119 + PP_4885 0.77 +0.3
5,554,119 + PP_4885 0.77 +0.0
5,554,120 - PP_4885 0.77 +0.5
5,554,120 - PP_4885 0.77 +0.8
5,554,120 - PP_4885 0.77 -0.3
5,554,121 + PP_4885 0.77 +0.5
5,554,126 - PP_4885 0.78 -0.4
5,554,126 - PP_4885 0.78 -0.7
5,554,133 + PP_4885 0.79 -0.8
5,554,160 + PP_4885 0.81 +0.3
5,554,160 + PP_4885 0.81 -0.1
5,554,210 - PP_4885 0.87 -0.3
5,554,343 + -0.5
5,554,343 + +0.3
5,554,343 + +0.2
5,554,344 - +0.0
5,554,344 - +0.2
5,554,344 - -0.9
5,554,344 - -0.4
5,554,344 - +0.1
5,554,344 - +0.2
5,554,346 + +0.2
5,554,346 + +0.6
5,554,347 - +0.1
5,554,357 + -0.0
5,554,357 + +0.2
5,554,357 + -0.2
5,554,357 + -0.3
5,554,358 - -0.1
5,554,358 - +0.4
5,554,358 - -0.3

Or see this region's nucleotide sequence