Strain Fitness in Escherichia coli BW25113 around b1792

Experiment: LB + ciprofloxacin Time24hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeaN and yeaO are separated by 54 nucleotidesyeaO and yoaF are separated by 21 nucleotidesyoaF and yeaP are separated by 182 nucleotides b1791: yeaN - predicted transporter (NCBI), at 1,873,697 to 1,874,878 yeaN b1792: yeaO - orf, hypothetical protein (VIMSS), at 1,874,933 to 1,875,280 yeaO b1793: yoaF - conserved outer membrane protein (NCBI), at 1,875,302 to 1,875,556 yoaF b1794: yeaP - orf, hypothetical protein (VIMSS), at 1,875,739 to 1,876,764 yeaP Position (kb) 1874 1875 1876Strain fitness (log2 ratio) -1 0 1at 1874.141 kb on - strand, within yeaNat 1874.429 kb on - strand, within yeaNat 1874.429 kb on - strand, within yeaNat 1874.429 kb on - strand, within yeaNat 1874.429 kb on - strand, within yeaNat 1874.457 kb on - strand, within yeaNat 1874.518 kb on - strand, within yeaNat 1874.614 kb on + strand, within yeaNat 1874.783 kb on + strandat 1875.211 kb on + strand, within yeaOat 1875.211 kb on + strand, within yeaOat 1875.211 kb on + strand, within yeaOat 1875.241 kb on - strand, within yeaOat 1875.241 kb on - strand, within yeaOat 1875.291 kb on + strandat 1875.416 kb on - strand, within yoaFat 1875.530 kb on + strand, within yoaFat 1875.571 kb on + strandat 1875.582 kb on + strandat 1875.724 kb on + strandat 1875.848 kb on - strand, within yeaPat 1876.009 kb on + strand, within yeaPat 1876.093 kb on + strand, within yeaPat 1876.241 kb on - strand, within yeaPat 1876.257 kb on + strand, within yeaPat 1876.257 kb on + strand, within yeaPat 1876.257 kb on + strand, within yeaPat 1876.257 kb on + strand, within yeaPat 1876.257 kb on + strand, within yeaP

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Per-strain Table

Position Strand Gene LocusTag Fraction LB + ciprofloxacin Time24hr
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1,874,141 - yeaN b1791 0.38 +0.7
1,874,429 - yeaN b1791 0.62 +0.0
1,874,429 - yeaN b1791 0.62 -0.2
1,874,429 - yeaN b1791 0.62 -0.3
1,874,429 - yeaN b1791 0.62 +0.3
1,874,457 - yeaN b1791 0.64 +0.2
1,874,518 - yeaN b1791 0.69 +0.2
1,874,614 + yeaN b1791 0.78 -0.1
1,874,783 + -0.1
1,875,211 + yeaO b1792 0.80 +0.4
1,875,211 + yeaO b1792 0.80 +0.3
1,875,211 + yeaO b1792 0.80 +0.5
1,875,241 - yeaO b1792 0.89 +0.4
1,875,241 - yeaO b1792 0.89 +0.8
1,875,291 + -0.7
1,875,416 - yoaF b1793 0.45 +0.4
1,875,530 + yoaF b1793 0.89 -0.2
1,875,571 + +0.2
1,875,582 + +0.8
1,875,724 + -0.3
1,875,848 - yeaP b1794 0.11 +0.0
1,876,009 + yeaP b1794 0.26 -0.3
1,876,093 + yeaP b1794 0.35 +1.2
1,876,241 - yeaP b1794 0.49 +0.3
1,876,257 + yeaP b1794 0.50 +0.2
1,876,257 + yeaP b1794 0.50 +0.3
1,876,257 + yeaP b1794 0.50 -0.1
1,876,257 + yeaP b1794 0.50 +0.3
1,876,257 + yeaP b1794 0.50 -0.0

Or see this region's nucleotide sequence