Strain Fitness in Escherichia coli BW25113 around b1698

Experiment: LB + ciprofloxacin Time24hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiQ and ydiR are separated by 19 nucleotidesydiR and ydiS are separated by 55 nucleotides b1697: ydiQ - hypothetical protein (NCBI), at 1,777,641 to 1,778,405 ydiQ b1698: ydiR - predicted electron transfer flavoprotein, FAD-binding (NCBI), at 1,778,425 to 1,779,363 ydiR b1699: ydiS - predicted oxidoreductase with FAD/NAD(P)-binding domain (NCBI), at 1,779,419 to 1,780,708 ydiS Position (kb) 1778 1779 1780Strain fitness (log2 ratio) -1 0 1 2at 1777.449 kb on + strandat 1777.456 kb on + strandat 1777.548 kb on - strandat 1777.564 kb on + strandat 1777.618 kb on + strandat 1777.685 kb on - strandat 1777.690 kb on - strandat 1777.700 kb on + strandat 1777.704 kb on - strandat 1777.776 kb on - strand, within ydiQat 1777.865 kb on - strand, within ydiQat 1777.917 kb on - strand, within ydiQat 1778.003 kb on + strand, within ydiQat 1778.059 kb on + strand, within ydiQat 1778.071 kb on + strand, within ydiQat 1778.071 kb on + strand, within ydiQat 1778.071 kb on + strand, within ydiQat 1778.294 kb on + strand, within ydiQat 1778.469 kb on + strandat 1778.740 kb on + strand, within ydiRat 1778.933 kb on - strand, within ydiRat 1779.145 kb on + strand, within ydiRat 1779.222 kb on - strand, within ydiRat 1779.423 kb on - strandat 1779.424 kb on - strandat 1779.424 kb on - strandat 1779.484 kb on + strandat 1779.721 kb on + strand, within ydiSat 1779.847 kb on + strand, within ydiSat 1780.127 kb on - strand, within ydiS

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Per-strain Table

Position Strand Gene LocusTag Fraction LB + ciprofloxacin Time24hr
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1,777,449 + +0.4
1,777,456 + +0.4
1,777,548 - +0.2
1,777,564 + -0.0
1,777,618 + +0.4
1,777,685 - -0.2
1,777,690 - -0.6
1,777,700 + -0.3
1,777,704 - +0.7
1,777,776 - ydiQ b1697 0.18 -0.1
1,777,865 - ydiQ b1697 0.29 -0.1
1,777,917 - ydiQ b1697 0.36 -0.2
1,778,003 + ydiQ b1697 0.47 +0.2
1,778,059 + ydiQ b1697 0.55 +0.2
1,778,071 + ydiQ b1697 0.56 -0.0
1,778,071 + ydiQ b1697 0.56 +0.5
1,778,071 + ydiQ b1697 0.56 -0.2
1,778,294 + ydiQ b1697 0.85 +0.1
1,778,469 + +0.3
1,778,740 + ydiR b1698 0.34 +0.4
1,778,933 - ydiR b1698 0.54 +0.5
1,779,145 + ydiR b1698 0.77 +0.1
1,779,222 - ydiR b1698 0.85 +0.5
1,779,423 - +0.3
1,779,424 - -0.5
1,779,424 - +0.0
1,779,484 + +0.2
1,779,721 + ydiS b1699 0.23 +0.5
1,779,847 + ydiS b1699 0.33 +0.1
1,780,127 - ydiS b1699 0.55 +2.1

Or see this region's nucleotide sequence