Strain Fitness in Escherichia coli BW25113 around b1126

Experiment: LB + ciprofloxacin Time24hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpotC and potB overlap by 4 nucleotidespotB and potA are separated by 13 nucleotidespotA and pepT are separated by 249 nucleotides b1124: potC - spermidine/putrescine ABC transporter membrane protein (NCBI), at 1,182,049 to 1,182,843 potC b1125: potB - spermidine/putrescine ABC transporter membrane protein (NCBI), at 1,182,840 to 1,183,667 potB b1126: potA - putrescine/spermidine ABC transporter ATPase protein (NCBI), at 1,183,681 to 1,184,817 potA b1127: pepT - peptidase T (NCBI), at 1,185,067 to 1,186,293 pepT Position (kb) 1183 1184 1185Strain fitness (log2 ratio) -2 -1 0 1at 1182.691 kb on + strand, within potCat 1182.700 kb on + strand, within potCat 1182.730 kb on + strand, within potCat 1182.910 kb on + strandat 1182.910 kb on + strandat 1182.914 kb on - strandat 1183.032 kb on + strand, within potBat 1183.032 kb on + strand, within potBat 1183.193 kb on - strand, within potBat 1183.202 kb on + strand, within potBat 1183.202 kb on + strand, within potBat 1183.283 kb on + strand, within potBat 1183.449 kb on + strand, within potBat 1183.542 kb on - strand, within potBat 1183.680 kb on - strandat 1183.698 kb on - strandat 1183.698 kb on - strandat 1183.711 kb on - strandat 1183.711 kb on - strandat 1183.884 kb on + strand, within potAat 1183.934 kb on - strand, within potAat 1184.015 kb on + strand, within potAat 1184.139 kb on - strand, within potAat 1184.163 kb on + strand, within potAat 1184.163 kb on + strand, within potAat 1184.286 kb on + strand, within potAat 1184.293 kb on + strand, within potAat 1184.334 kb on - strand, within potAat 1184.361 kb on - strand, within potAat 1184.599 kb on - strand, within potAat 1184.666 kb on + strand, within potAat 1184.692 kb on + strand, within potAat 1184.712 kb on + strandat 1184.724 kb on + strandat 1184.732 kb on - strandat 1184.847 kb on + strandat 1185.128 kb on + strandat 1185.135 kb on - strandat 1185.135 kb on - strandat 1185.153 kb on + strandat 1185.190 kb on + strand, within pepTat 1185.276 kb on + strand, within pepTat 1185.296 kb on + strand, within pepTat 1185.409 kb on + strand, within pepTat 1185.639 kb on + strand, within pepTat 1185.647 kb on + strand, within pepTat 1185.720 kb on + strand, within pepTat 1185.746 kb on - strand, within pepTat 1185.779 kb on - strand, within pepT

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Per-strain Table

Position Strand Gene LocusTag Fraction LB + ciprofloxacin Time24hr
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1,182,691 + potC b1124 0.81 -0.8
1,182,700 + potC b1124 0.82 -0.6
1,182,730 + potC b1124 0.86 -1.8
1,182,910 + -0.2
1,182,910 + -0.2
1,182,914 - -0.3
1,183,032 + potB b1125 0.23 -2.0
1,183,032 + potB b1125 0.23 -0.1
1,183,193 - potB b1125 0.43 -0.6
1,183,202 + potB b1125 0.44 -1.6
1,183,202 + potB b1125 0.44 -1.0
1,183,283 + potB b1125 0.54 -0.1
1,183,449 + potB b1125 0.74 -0.6
1,183,542 - potB b1125 0.85 -0.1
1,183,680 - +0.3
1,183,698 - +0.1
1,183,698 - +0.3
1,183,711 - +0.0
1,183,711 - -0.5
1,183,884 + potA b1126 0.18 -1.3
1,183,934 - potA b1126 0.22 -0.4
1,184,015 + potA b1126 0.29 -1.0
1,184,139 - potA b1126 0.40 -0.1
1,184,163 + potA b1126 0.42 -1.6
1,184,163 + potA b1126 0.42 -1.2
1,184,286 + potA b1126 0.53 +0.5
1,184,293 + potA b1126 0.54 -1.6
1,184,334 - potA b1126 0.57 -0.7
1,184,361 - potA b1126 0.60 -0.3
1,184,599 - potA b1126 0.81 -1.1
1,184,666 + potA b1126 0.87 -0.8
1,184,692 + potA b1126 0.89 -0.4
1,184,712 + +0.3
1,184,724 + -1.1
1,184,732 - -0.3
1,184,847 + +0.0
1,185,128 + -0.6
1,185,135 - -1.1
1,185,135 - -0.2
1,185,153 + -0.0
1,185,190 + pepT b1127 0.10 +0.4
1,185,276 + pepT b1127 0.17 +0.7
1,185,296 + pepT b1127 0.19 -0.0
1,185,409 + pepT b1127 0.28 +0.6
1,185,639 + pepT b1127 0.47 -0.1
1,185,647 + pepT b1127 0.47 -0.2
1,185,720 + pepT b1127 0.53 -0.3
1,185,746 - pepT b1127 0.55 +0.0
1,185,779 - pepT b1127 0.58 +0.0

Or see this region's nucleotide sequence