Strain Fitness in Escherichia coli BW25113 around b0912

Experiment: LB + ciprofloxacin Time24hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsA and ihfB are separated by 159 nucleotidesihfB and ycaI are separated by 207 nucleotides b0911: rpsA - 30S ribosomal protein S1 (NCBI), at 961,218 to 962,891 rpsA b0912: ihfB - integration host factor subunit beta (NCBI), at 963,051 to 963,335 ihfB b0913: ycaI - orf, hypothetical protein (VIMSS), at 963,543 to 965,807 ycaI Position (kb) 963 964Strain fitness (log2 ratio) -2 -1 0 1at 963.138 kb on + strand, within ihfBat 963.207 kb on + strand, within ihfBat 963.207 kb on + strand, within ihfBat 963.215 kb on - strand, within ihfBat 963.239 kb on + strand, within ihfBat 963.294 kb on - strand, within ihfBat 963.529 kb on + strandat 963.568 kb on - strandat 963.679 kb on - strandat 963.779 kb on + strand, within ycaIat 963.962 kb on - strand, within ycaIat 964.099 kb on - strand, within ycaIat 964.255 kb on + strand, within ycaI

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Per-strain Table

Position Strand Gene LocusTag Fraction LB + ciprofloxacin Time24hr
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963,138 + ihfB b0912 0.31 -1.8
963,207 + ihfB b0912 0.55 -1.3
963,207 + ihfB b0912 0.55 -2.3
963,215 - ihfB b0912 0.58 -0.3
963,239 + ihfB b0912 0.66 -1.1
963,294 - ihfB b0912 0.85 +0.3
963,529 + +0.2
963,568 - +0.4
963,679 - +0.5
963,779 + ycaI b0913 0.10 +0.3
963,962 - ycaI b0913 0.18 -0.4
964,099 - ycaI b0913 0.25 +0.9
964,255 + ycaI b0913 0.31 +0.0

Or see this region's nucleotide sequence