Strain Fitness in Escherichia coli BW25113 around b3114

Experiment: LB + carbenicillin Time9hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB + carbenicillin Time9hr
3,257,196	+	tdcG	b4471	0.65	+0.3
3,257,196	+	tdcG	b4471	0.65	+0.6
3,257,238	+	tdcG	b4471	0.68	-0.4
3,257,260	-	tdcG	b4471	0.70	+0.5
3,257,260	-	tdcG	b4471	0.70	+0.2
3,257,281	-	tdcG	b4471	0.71	-0.4
3,257,281	-	tdcG	b4471	0.71	+0.0
3,257,322	-	tdcG	b4471	0.74	+0.1
3,257,402	-	tdcG	b4471	0.80	-0.2
3,257,419	-	tdcG	b4471	0.81	+0.2
3,257,436	+	tdcG	b4471	0.83	+0.0
3,257,516	-	tdcG	b4471	0.89	+0.2
3,257,516	-	tdcG	b4471	0.89	+0.3
3,257,517	+	tdcG	b4471	0.89	-0.1
3,257,536	+				+0.5
3,257,544	-				-0.3
3,257,544	-				-0.2
3,257,544	-				+0.4
3,257,544	-				+0.2
3,257,608	+				+0.3
3,257,608	+				+0.2
3,257,622	-				+0.1
3,257,695	+				+0.1
3,257,716	+				+0.6
3,257,745	+				-0.8
3,257,748	-				+0.2
3,257,813	+	yhaR	b3113	0.18	-0.2
3,257,825	+	yhaR	b3113	0.21	-0.2
3,257,825	+	yhaR	b3113	0.21	+0.9
3,257,865	-	yhaR	b3113	0.31	-0.6
3,257,937	+	yhaR	b3113	0.50	+0.9
3,257,937	+	yhaR	b3113	0.50	+0.2
3,257,957	-	yhaR	b3113	0.55	-0.2
3,258,052	-	yhaR	b3113	0.79	-0.1
3,258,054	-	yhaR	b3113	0.80	+0.2
3,258,059	-	yhaR	b3113	0.81	+0.3
3,258,086	-	yhaR	b3113	0.88	+0.0
3,258,192	+				+0.4
3,258,202	+				-0.1
3,258,202	+				-0.2
3,258,220	-				+0.2
3,258,220	-				-0.4
3,258,314	-				+0.4
3,258,372	+				-0.2
3,258,428	-	tdcE	b3114	0.12	-0.5
3,258,437	-	tdcE	b3114	0.13	+0.2
3,258,620	-	tdcE	b3114	0.21	+1.0
3,258,620	-	tdcE	b3114	0.21	+0.2
3,258,633	-	tdcE	b3114	0.21	-0.2
3,258,636	+	tdcE	b3114	0.21	+0.2
3,258,641	+	tdcE	b3114	0.22	-0.1
3,258,689	+	tdcE	b3114	0.24	-0.1
3,258,758	-	tdcE	b3114	0.27	-0.1
3,258,758	-	tdcE	b3114	0.27	-0.3
3,258,785	+	tdcE	b3114	0.28	+0.4
3,258,808	-	tdcE	b3114	0.29	-0.4
3,258,808	-	tdcE	b3114	0.29	+0.1
3,258,934	+	tdcE	b3114	0.34	+0.3
3,258,934	+	tdcE	b3114	0.34	-0.2
3,258,936	+	tdcE	b3114	0.34	-0.3
3,258,936	+	tdcE	b3114	0.34	+0.1
3,258,959	-	tdcE	b3114	0.35	+0.0
3,258,964	-	tdcE	b3114	0.36	-0.0
3,259,013	+	tdcE	b3114	0.38	-0.3
3,259,013	+	tdcE	b3114	0.38	-0.3
3,259,060	-	tdcE	b3114	0.40	+0.1
3,259,070	+	tdcE	b3114	0.40	-0.1
3,259,164	-	tdcE	b3114	0.44	-0.4
3,259,209	-	tdcE	b3114	0.46	-0.2
3,259,234	+	tdcE	b3114	0.47	-0.3
3,259,242	-	tdcE	b3114	0.48	+0.2
3,259,333	+	tdcE	b3114	0.52	+0.2
3,259,341	-	tdcE	b3114	0.52	-0.4
3,259,341	-	tdcE	b3114	0.52	-0.4
3,259,341	-	tdcE	b3114	0.52	-0.3
3,259,384	+	tdcE	b3114	0.54	-0.1
3,259,384	+	tdcE	b3114	0.54	-0.1
3,259,392	-	tdcE	b3114	0.54	-0.3
3,259,394	+	tdcE	b3114	0.54	-1.1
3,259,453	-	tdcE	b3114	0.57	-0.3
3,259,478	-	tdcE	b3114	0.58	+0.1
3,259,536	+	tdcE	b3114	0.61	+0.1
3,259,595	+	tdcE	b3114	0.63	-0.6
3,259,595	+	tdcE	b3114	0.63	-0.0
3,259,668	-	tdcE	b3114	0.66	-0.4
3,259,730	+	tdcE	b3114	0.69	+0.3
3,259,738	+	tdcE	b3114	0.69	-0.2
3,259,750	+	tdcE	b3114	0.70	+0.2
3,259,753	-	tdcE	b3114	0.70	+0.3
3,259,758	-	tdcE	b3114	0.70	-0.1
3,259,758	-	tdcE	b3114	0.70	-0.4
3,259,851	+	tdcE	b3114	0.74	+0.2
3,259,860	+	tdcE	b3114	0.75	+0.3
3,259,860	+	tdcE	b3114	0.75	+0.1
3,259,890	+	tdcE	b3114	0.76	-0.3
3,259,915	-	tdcE	b3114	0.77	-0.1
3,259,926	-	tdcE	b3114	0.78	+0.7
3,259,991	+	tdcE	b3114	0.80	-0.1
3,260,010	+	tdcE	b3114	0.81	+0.6
3,260,010	+	tdcE	b3114	0.81	+0.2
3,260,010	+	tdcE	b3114	0.81	-0.4
3,260,010	+	tdcE	b3114	0.81	-0.3
3,260,041	+	tdcE	b3114	0.83	-0.3
3,260,041	+	tdcE	b3114	0.83	+0.0
3,260,041	+	tdcE	b3114	0.83	+0.7
3,260,067	+	tdcE	b3114	0.84	+0.4
3,260,068	-	tdcE	b3114	0.84	-0.1
3,260,093	+	tdcE	b3114	0.85	+0.8
3,260,095	+	tdcE	b3114	0.85	-0.5
3,260,095	+	tdcE	b3114	0.85	-0.2
3,260,095	+	tdcE	b3114	0.85	+0.4
3,260,096	+	tdcE	b3114	0.85	-0.4
3,260,103	-	tdcE	b3114	0.85	-0.5
3,260,106	+	tdcE	b3114	0.85	-0.5
3,260,108	+	tdcE	b3114	0.85	+0.2
3,260,155	+	tdcE	b3114	0.88	-0.2
3,260,155	+	tdcE	b3114	0.88	+0.0
3,260,155	+	tdcE	b3114	0.88	+0.8
3,260,155	+	tdcE	b3114	0.88	+0.0
3,260,197	+	tdcE	b3114	0.89	-0.5
3,260,216	-				-0.9
3,260,230	+				-0.0
3,260,230	+				+0.5
3,260,249	-				-0.9
3,260,264	-				+0.3
3,260,264	-				+0.3
3,260,267	+				+0.2
3,260,294	+				+0.4
3,260,295	-				+0.0
3,260,312	+				-1.4
3,260,312	+				-1.1
3,260,312	+				-1.1
3,260,313	+				+0.5
3,260,313	+				-0.5
3,260,313	+				+0.4
3,260,313	+				-1.1
3,260,313	+				+0.8
3,260,315	+				+0.9
3,260,315	+				-0.8
3,260,321	-				-1.2
3,260,321	-				-0.8
3,260,321	-				-2.2
3,260,323	+				+0.4
3,260,323	+				+0.5
3,260,323	+				+0.2
3,260,323	+				+0.2
3,260,323	+				-1.1
3,260,323	+				+0.7
3,260,323	+				-0.2
3,260,323	+				-0.4
3,260,325	+				+0.8
3,260,325	+				-0.8
3,260,325	+				+0.1
3,260,325	+				-0.5
3,260,325	+				+0.2
3,260,325	+				-1.4
3,260,325	+				-0.1
3,260,330	-				-1.1
3,260,331	-				+1.0
3,260,331	-				+1.0
3,260,331	-				-0.6
3,260,333	-				-1.3
3,260,333	-				-0.1
3,260,333	-				-0.4
3,260,333	-				+2.0
3,260,389	-				+1.0
3,260,389	-				+1.0
3,260,392	+				+0.7
3,260,392	+				-0.6
3,260,392	+				-1.3
3,260,400	-				+1.0
3,260,400	-				+1.0
3,260,403	+				+1.0
3,260,403	+				+3.3
3,260,403	+				+1.0
3,260,403	+				+2.6
3,260,403	+				+1.0
3,260,408	-				+1.0
3,260,408	-				+0.4
3,260,410	+				+0.5
3,260,410	+				+3.3
3,260,411	-				+0.0
3,260,411	-				+2.0
3,260,411	-				+0.0
3,260,421	+				+1.0
3,260,427	+				+1.0
3,260,427	+				-1.3
3,260,428	+				-0.3
3,260,461	-				+0.1
3,260,461	-				+0.0
3,260,461	-				-0.2
3,260,461	-				+0.0
3,260,461	-				+3.0
3,260,551	+				+1.0
3,260,559	-				+1.0
3,260,559	-				+0.4
3,260,572	-				-0.2
3,260,607	-	tdcD	b3115	0.11	+0.0
3,260,609	-	tdcD	b3115	0.11	-1.3
3,260,639	+	tdcD	b3115	0.14	+1.0
3,260,653	-	tdcD	b3115	0.15	+0.2
3,260,653	-	tdcD	b3115	0.15	-0.4
3,260,653	-	tdcD	b3115	0.15	-0.6
3,260,696	-	tdcD	b3115	0.18	-0.5
3,260,724	-	tdcD	b3115	0.21	-1.0
3,260,743	-	tdcD	b3115	0.22	-1.2
3,260,743	-	tdcD	b3115	0.22	-0.6
3,260,743	-	tdcD	b3115	0.22	-0.4
3,260,780	-	tdcD	b3115	0.25	-1.1
3,260,780	-	tdcD	b3115	0.25	-0.4
3,260,782	-	tdcD	b3115	0.25	-0.7
3,260,818	-	tdcD	b3115	0.28	-1.5
3,260,818	-	tdcD	b3115	0.28	+0.1
3,260,818	-	tdcD	b3115	0.28	+0.6
3,260,818	-	tdcD	b3115	0.28	-0.5
3,260,826	-	tdcD	b3115	0.29	-0.5
3,260,887	+	tdcD	b3115	0.34	+1.0
3,260,894	-	tdcD	b3115	0.35	-0.3
3,260,905	+	tdcD	b3115	0.36	+1.0
3,260,911	-	tdcD	b3115	0.36	-0.3
3,260,915	-	tdcD	b3115	0.36	-0.9
3,260,917	+	tdcD	b3115	0.37	-1.3
3,260,921	-	tdcD	b3115	0.37	-0.4
3,260,921	-	tdcD	b3115	0.37	-0.2
3,260,925	-	tdcD	b3115	0.37	-0.3
3,260,927	-	tdcD	b3115	0.37	-0.4
3,260,937	-	tdcD	b3115	0.38	-0.5
3,260,937	-	tdcD	b3115	0.38	-0.5
3,260,948	-	tdcD	b3115	0.39	-0.3
3,260,948	-	tdcD	b3115	0.39	-0.4
3,260,948	-	tdcD	b3115	0.39	-0.5
3,260,948	-	tdcD	b3115	0.39	-0.4
3,261,048	+				+1.0
3,261,055	+	tdcD	b3115	0.48	-1.2
3,261,055	+	tdcD	b3115	0.48	-0.5
3,261,065	+	tdcD	b3115	0.49	-0.3
3,261,065	+	tdcD	b3115	0.49	-0.6
3,261,073	-	tdcD	b3115	0.50	-0.8
3,261,103	-	tdcD	b3115	0.52	-0.3
3,261,103	-	tdcD	b3115	0.52	+0.6
3,261,116	-	tdcD	b3115	0.53	-0.3
3,261,116	-	tdcD	b3115	0.53	+0.0
3,261,121	+	tdcD	b3115	0.54	+0.0
3,261,121	+	tdcD	b3115	0.54	-0.3
3,261,121	+	tdcD	b3115	0.54	-0.3
3,261,128	+	tdcD	b3115	0.54	-0.3
3,261,131	+	tdcD	b3115	0.54	-0.4
3,261,131	+	tdcD	b3115	0.54	+0.1
3,261,141	-	tdcD	b3115	0.55	-0.3
3,261,142	+	tdcD	b3115	0.55	-0.5
3,261,142	+	tdcD	b3115	0.55	-0.7
3,261,148	+	tdcD	b3115	0.56	-0.7
3,261,148	+	tdcD	b3115	0.56	-0.3
3,261,153	+	tdcD	b3115	0.56	+0.3
3,261,161	-	tdcD	b3115	0.57	-1.1
3,261,163	+	tdcD	b3115	0.57	+0.4
3,261,163	+	tdcD	b3115	0.57	-0.5
3,261,163	+	tdcD	b3115	0.57	-0.5
3,261,173	+	tdcD	b3115	0.58	-0.4
3,261,173	+	tdcD	b3115	0.58	+0.0
3,261,173	+	tdcD	b3115	0.58	-0.7
3,261,173	+	tdcD	b3115	0.58	-1.4
3,261,173	-	tdcD	b3115	0.58	+1.0
3,261,173	-	tdcD	b3115	0.58	+1.0
3,261,177	+	tdcD	b3115	0.58	-1.2
3,261,177	+	tdcD	b3115	0.58	-0.3
3,261,177	+	tdcD	b3115	0.58	-0.5
3,261,177	+	tdcD	b3115	0.58	-0.7
3,261,178	+	tdcD	b3115	0.58	-0.2
3,261,178	+	tdcD	b3115	0.58	-1.4
3,261,183	-	tdcD	b3115	0.59	+2.0
3,261,183	-	tdcD	b3115	0.59	-0.3
3,261,185	-	tdcD	b3115	0.59	+0.6
3,261,185	-	tdcD	b3115	0.59	-2.7
3,261,208	+	tdcD	b3115	0.61	-0.5
3,261,208	+	tdcD	b3115	0.61	-0.1
3,261,212	+	tdcD	b3115	0.61	-0.7
3,261,214	+	tdcD	b3115	0.61	+0.0
3,261,222	+	tdcD	b3115	0.62	-0.4
3,261,222	+	tdcD	b3115	0.62	+0.0
3,261,237	+	tdcD	b3115	0.63	-1.0
3,261,241	+	tdcD	b3115	0.63	+0.5
3,261,241	+	tdcD	b3115	0.63	-0.1
3,261,241	+	tdcD	b3115	0.63	-0.6
3,261,256	+	tdcD	b3115	0.65	-0.2
3,261,271	+	tdcD	b3115	0.66	-0.2
3,261,271	+	tdcD	b3115	0.66	-0.2
3,261,334	-	tdcD	b3115	0.71	-0.6
3,261,339	-	tdcD	b3115	0.72	-0.3
3,261,343	+	tdcD	b3115	0.72	-0.8
3,261,343	+	tdcD	b3115	0.72	-1.1
3,261,353	-	tdcD	b3115	0.73	-0.9
3,261,359	+	tdcD	b3115	0.73	-0.2
3,261,435	+	tdcD	b3115	0.79	-0.7