Strain Fitness in Escherichia coli BW25113 around b1530

Experiment: LB + ciprofloxacin Time8hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeA and marC are separated by 24 nucleotidesmarC and marR are separated by 211 nucleotidesmarR and marA are separated by 19 nucleotidesmarA and marB are separated by 31 nucleotidesmarB and ydeD are separated by 30 nucleotides b1528: ydeA - sugar efflux transporter (NCBI), at 1,615,052 to 1,616,242 ydeA b1529: marC - predicted transporter (NCBI), at 1,616,267 to 1,616,932 marC b1530: marR - multiple antibiotic resistance protein; repressor of mar operon (VIMSS), at 1,617,144 to 1,617,578 marR b1531: marA - multiple antibiotic resistance; transcriptional activator of defense systems (VIMSS), at 1,617,598 to 1,617,981 marA b1532: marB - hypothetical protein (NCBI), at 1,618,013 to 1,618,231 marB b1533: ydeD - orf, hypothetical protein (VIMSS), at 1,618,262 to 1,619,161 ydeD Position (kb) 1617 1618Strain fitness (log2 ratio) -2 -1 0 1at 1616.153 kb on - strandat 1616.277 kb on + strandat 1616.319 kb on + strandat 1616.319 kb on + strandat 1616.522 kb on + strand, within marCat 1616.899 kb on + strandat 1617.172 kb on - strandat 1617.277 kb on - strand, within marRat 1617.288 kb on + strand, within marRat 1617.291 kb on - strand, within marRat 1617.291 kb on - strand, within marRat 1617.302 kb on + strand, within marRat 1617.312 kb on - strand, within marRat 1617.358 kb on + strand, within marRat 1617.377 kb on + strand, within marRat 1617.377 kb on + strand, within marRat 1617.471 kb on - strand, within marRat 1617.606 kb on + strandat 1617.638 kb on + strand, within marAat 1617.655 kb on - strand, within marAat 1617.702 kb on + strand, within marAat 1618.111 kb on - strand, within marBat 1618.215 kb on - strandat 1618.234 kb on - strandat 1618.521 kb on - strand, within ydeDat 1618.521 kb on - strand, within ydeD

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Per-strain Table

Position Strand Gene LocusTag Fraction LB + ciprofloxacin Time8hr
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1,616,153 - +0.5
1,616,277 + +1.6
1,616,319 + +0.2
1,616,319 + -0.4
1,616,522 + marC b1529 0.38 +0.0
1,616,899 + +1.5
1,617,172 - +0.2
1,617,277 - marR b1530 0.31 +1.0
1,617,288 + marR b1530 0.33 +0.2
1,617,291 - marR b1530 0.34 +0.3
1,617,291 - marR b1530 0.34 +0.1
1,617,302 + marR b1530 0.36 +0.3
1,617,312 - marR b1530 0.39 +0.8
1,617,358 + marR b1530 0.49 -0.2
1,617,377 + marR b1530 0.54 -0.0
1,617,377 + marR b1530 0.54 +1.4
1,617,471 - marR b1530 0.75 -2.5
1,617,606 + +0.2
1,617,638 + marA b1531 0.10 -0.3
1,617,655 - marA b1531 0.15 +0.5
1,617,702 + marA b1531 0.27 +0.2
1,618,111 - marB b1532 0.45 +0.0
1,618,215 - +0.3
1,618,234 - +0.3
1,618,521 - ydeD b1533 0.29 +0.2
1,618,521 - ydeD b1533 0.29 +0.1

Or see this region's nucleotide sequence