Strain Fitness in Escherichia coli BW25113 around b1469

Experiment: LB + ciprofloxacin Time8hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnarZ and narU are separated by 81 nucleotidesnarU and yddJ are separated by 323 nucleotidesyddJ and yddK are separated by 38 nucleotides b1468: narZ - nitrate reductase 2 (NRZ), alpha subunit (NCBI), at 1,536,874 to 1,540,614 narZ b1469: narU - nitrate/nitrite transporter (NCBI), at 1,540,696 to 1,542,084 narU b1470: yddJ - hypothetical protein (NCBI), at 1,542,408 to 1,542,743 yddJ b1471: yddK - hypothetical protein (RefSeq), at 1,542,782 to 1,543,771 yddK Position (kb) 1540 1541 1542 1543Strain fitness (log2 ratio) -1 0 1 2at 1539.813 kb on + strand, within narZat 1539.875 kb on + strand, within narZat 1539.875 kb on + strand, within narZat 1539.884 kb on - strand, within narZat 1540.463 kb on - strandat 1540.622 kb on + strandat 1540.622 kb on + strandat 1540.720 kb on + strandat 1540.790 kb on + strandat 1540.922 kb on + strand, within narUat 1540.922 kb on + strand, within narUat 1541.002 kb on - strand, within narUat 1541.375 kb on - strand, within narUat 1541.375 kb on - strand, within narUat 1541.535 kb on + strand, within narUat 1541.599 kb on + strand, within narUat 1541.784 kb on + strand, within narUat 1541.795 kb on + strand, within narUat 1542.086 kb on - strandat 1542.094 kb on + strandat 1542.207 kb on - strandat 1542.207 kb on - strandat 1542.314 kb on + strandat 1542.318 kb on + strandat 1542.381 kb on + strandat 1542.423 kb on + strandat 1542.439 kb on + strandat 1542.441 kb on + strandat 1542.441 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB + ciprofloxacin Time8hr
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1,539,813 + narZ b1468 0.79 -0.0
1,539,875 + narZ b1468 0.80 +0.1
1,539,875 + narZ b1468 0.80 +0.4
1,539,884 - narZ b1468 0.80 +0.6
1,540,463 - +0.1
1,540,622 + +0.2
1,540,622 + +0.6
1,540,720 + -0.2
1,540,790 + +0.4
1,540,922 + narU b1469 0.16 +0.6
1,540,922 + narU b1469 0.16 +0.8
1,541,002 - narU b1469 0.22 +0.2
1,541,375 - narU b1469 0.49 +0.3
1,541,375 - narU b1469 0.49 -0.1
1,541,535 + narU b1469 0.60 +0.7
1,541,599 + narU b1469 0.65 +0.9
1,541,784 + narU b1469 0.78 -0.0
1,541,795 + narU b1469 0.79 +0.3
1,542,086 - +0.6
1,542,094 + -0.3
1,542,207 - +1.6
1,542,207 - +1.9
1,542,314 + +1.0
1,542,318 + -1.6
1,542,381 + -0.1
1,542,423 + +0.6
1,542,439 + +0.6
1,542,441 + +0.6
1,542,441 + +0.6

Or see this region's nucleotide sequence