Experiment: LB + ciprofloxacin Time6hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yoeG and yoeH are separated by 368 nucleotides yoeH and yoeA are separated by 215 nucleotides yoeA and insD-3 are separated by 13 nucleotides insD-3 and insC overlap by 43 nucleotides
b4640: yoeG - no description, at 2,065,384 to 2,065,916
yoeG
b4641: yoeH - no description, at 2,066,285 to 2,066,443
yoeH
b4582: yoeA - no description, at 2,066,659 to 2,066,962
yoeA
b1996: insD-3 - CP4-44 prophage; IS2 insertion element transposase InsAB' (NCBI), at 2,066,976 to 2,067,881
insD-3
b1997: insC - KpLE2 phage-like element; IS2 insertion element repressor InsA (RefSeq), at 2,067,839 to 2,068,204
insC
Position (kb)
2066
2067 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2065.661 kb on - strand, within yoeG at 2065.664 kb on + strand, within yoeG at 2065.666 kb on - strand, within yoeG at 2065.712 kb on - strand, within yoeG at 2065.782 kb on + strand, within yoeG at 2065.858 kb on - strand, within yoeG at 2065.858 kb on - strand, within yoeG at 2065.858 kb on - strand, within yoeG at 2065.891 kb on - strand at 2065.920 kb on + strand at 2065.925 kb on - strand at 2065.925 kb on - strand at 2065.979 kb on - strand at 2066.049 kb on - strand at 2066.102 kb on - strand at 2066.119 kb on - strand at 2066.119 kb on - strand at 2066.129 kb on - strand at 2066.129 kb on - strand at 2066.133 kb on - strand at 2066.134 kb on - strand at 2066.134 kb on - strand at 2066.134 kb on - strand at 2066.138 kb on - strand at 2066.196 kb on - strand at 2066.202 kb on - strand at 2066.202 kb on - strand at 2066.204 kb on + strand at 2066.207 kb on - strand at 2066.207 kb on - strand at 2066.210 kb on + strand at 2066.210 kb on + strand at 2066.220 kb on + strand at 2066.229 kb on - strand at 2066.229 kb on - strand at 2066.289 kb on + strand at 2066.295 kb on - strand at 2066.297 kb on - strand at 2066.297 kb on - strand at 2066.301 kb on + strand, within yoeH at 2066.302 kb on - strand, within yoeH at 2066.302 kb on - strand, within yoeH at 2066.303 kb on - strand, within yoeH at 2066.303 kb on - strand, within yoeH at 2066.309 kb on - strand, within yoeH at 2066.309 kb on - strand, within yoeH at 2066.309 kb on - strand, within yoeH at 2066.309 kb on - strand, within yoeH at 2066.341 kb on - strand, within yoeH at 2066.341 kb on - strand, within yoeH at 2066.351 kb on - strand, within yoeH at 2066.379 kb on - strand, within yoeH at 2066.389 kb on - strand, within yoeH at 2066.426 kb on - strand, within yoeH at 2066.434 kb on - strand at 2066.460 kb on - strand at 2066.460 kb on - strand at 2066.464 kb on - strand at 2066.464 kb on - strand at 2066.468 kb on + strand at 2066.468 kb on + strand at 2066.478 kb on + strand at 2066.483 kb on + strand at 2066.506 kb on - strand at 2066.506 kb on - strand at 2066.654 kb on + strand at 2066.654 kb on + strand at 2066.675 kb on - strand at 2066.787 kb on - strand, within yoeA at 2066.841 kb on - strand, within yoeA at 2066.921 kb on - strand, within yoeA at 2066.925 kb on - strand, within yoeA at 2066.925 kb on - strand, within yoeA at 2067.013 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB + ciprofloxacin Time6hr remove 2,065,661 - yoeG b4640 0.52 +0.8 2,065,664 + yoeG b4640 0.53 +0.8 2,065,666 - yoeG b4640 0.53 +1.8 2,065,712 - yoeG b4640 0.62 +0.8 2,065,782 + yoeG b4640 0.75 +0.8 2,065,858 - yoeG b4640 0.89 +1.8 2,065,858 - yoeG b4640 0.89 +0.8 2,065,858 - yoeG b4640 0.89 +0.8 2,065,891 - +0.8 2,065,920 + +0.8 2,065,925 - +1.8 2,065,925 - +2.4 2,065,979 - +1.1 2,066,049 - -0.1 2,066,102 - +0.6 2,066,119 - +0.2 2,066,119 - -0.4 2,066,129 - +0.2 2,066,129 - +0.2 2,066,133 - -0.0 2,066,134 - +0.4 2,066,134 - +0.6 2,066,134 - +0.1 2,066,138 - +1.4 2,066,196 - +0.3 2,066,202 - +0.8 2,066,202 - +0.9 2,066,204 + -0.8 2,066,207 - +0.7 2,066,207 - +0.4 2,066,210 + +0.2 2,066,210 + -1.8 2,066,220 + +0.0 2,066,229 - +0.2 2,066,229 - +1.6 2,066,289 + -1.2 2,066,295 - +1.5 2,066,297 - +0.2 2,066,297 - -0.9 2,066,301 + yoeH b4641 0.10 +0.8 2,066,302 - yoeH b4641 0.11 +0.4 2,066,302 - yoeH b4641 0.11 +0.0 2,066,303 - yoeH b4641 0.11 +0.9 2,066,303 - yoeH b4641 0.11 -0.5 2,066,309 - yoeH b4641 0.15 -0.2 2,066,309 - yoeH b4641 0.15 +0.6 2,066,309 - yoeH b4641 0.15 +0.0 2,066,309 - yoeH b4641 0.15 +1.3 2,066,341 - yoeH b4641 0.35 +1.0 2,066,341 - yoeH b4641 0.35 -0.1 2,066,351 - yoeH b4641 0.42 +0.3 2,066,379 - yoeH b4641 0.59 +0.1 2,066,389 - yoeH b4641 0.65 +0.3 2,066,426 - yoeH b4641 0.89 +0.5 2,066,434 - +0.1 2,066,460 - +0.4 2,066,460 - +0.2 2,066,464 - +0.4 2,066,464 - -0.0 2,066,468 + +0.8 2,066,468 + +0.0 2,066,478 + -0.8 2,066,483 + +0.2 2,066,506 - +0.1 2,066,506 - +0.3 2,066,654 + +0.1 2,066,654 + -1.0 2,066,675 - -0.2 2,066,787 - yoeA b4582 0.42 +0.2 2,066,841 - yoeA b4582 0.60 +0.3 2,066,921 - yoeA b4582 0.86 +0.7 2,066,925 - yoeA b4582 0.88 +0.1 2,066,925 - yoeA b4582 0.88 +0.8 2,067,013 - -0.0
Or see this region's nucleotide sequence