Strain Fitness in Escherichia coli BW25113 around b1287

Experiment: LB + ciprofloxacin Time6hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrnb and yciW are separated by 67 nucleotidesyciW and fabI are separated by 143 nucleotides b1286: rnb - exoribonuclease II (NCBI), at 1,345,002 to 1,346,936 rnb b1287: yciW - putative oxidoreductase (VIMSS), at 1,347,004 to 1,348,131 yciW b1288: fabI - enoyl-(acyl carrier protein) reductase (NCBI), at 1,348,275 to 1,349,063 fabI Position (kb) 1347 1348 1349Strain fitness (log2 ratio) -1 0 1at 1346.088 kb on + strand, within rnbat 1346.451 kb on - strand, within rnbat 1346.615 kb on + strand, within rnbat 1346.966 kb on + strandat 1347.070 kb on - strandat 1347.070 kb on - strandat 1347.370 kb on - strand, within yciWat 1347.512 kb on + strand, within yciWat 1347.594 kb on - strand, within yciWat 1347.924 kb on - strand, within yciWat 1348.066 kb on - strandat 1348.081 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB + ciprofloxacin Time6hr
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1,346,088 + rnb b1286 0.56 +0.1
1,346,451 - rnb b1286 0.75 +0.9
1,346,615 + rnb b1286 0.83 +0.8
1,346,966 + +1.2
1,347,070 - +0.1
1,347,070 - +0.3
1,347,370 - yciW b1287 0.32 +0.9
1,347,512 + yciW b1287 0.45 -0.2
1,347,594 - yciW b1287 0.52 +0.2
1,347,924 - yciW b1287 0.82 +0.5
1,348,066 - +0.2
1,348,081 - +0.3

Or see this region's nucleotide sequence