Strain Fitness in Escherichia coli BW25113 around b1464

Experiment: LB Time1hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnhoA and yddE are separated by 95 nucleotidesyddE and narV are separated by 78 nucleotidesnarV and narW overlap by 4 nucleotides b1463: nhoA - N-hydroxyarylamine O-acetyltransferase (NCBI), at 1,532,048 to 1,532,893 nhoA b1464: yddE - hypothetical protein (NCBI), at 1,532,989 to 1,533,882 yddE b1465: narV - nitrate reductase 2 (NRZ), gamma subunit (NCBI), at 1,533,961 to 1,534,641 narV b1466: narW - nitrate reductase 2 (NRZ), delta subunit (assembly subunit) (NCBI), at 1,534,638 to 1,535,333 narW Position (kb) 1532 1533 1534Strain fitness (log2 ratio) -2 -1 0 1at 1532.030 kb on - strandat 1532.030 kb on - strandat 1532.151 kb on - strand, within nhoAat 1532.151 kb on - strand, within nhoAat 1532.151 kb on - strand, within nhoAat 1532.159 kb on + strand, within nhoAat 1532.159 kb on + strand, within nhoAat 1532.497 kb on - strand, within nhoAat 1532.497 kb on - strand, within nhoAat 1532.501 kb on + strand, within nhoAat 1532.501 kb on + strand, within nhoAat 1532.517 kb on - strand, within nhoAat 1532.530 kb on - strand, within nhoAat 1532.595 kb on + strand, within nhoAat 1532.688 kb on + strand, within nhoAat 1532.696 kb on - strand, within nhoAat 1532.746 kb on + strand, within nhoAat 1532.785 kb on - strand, within nhoAat 1532.834 kb on - strandat 1532.950 kb on + strandat 1533.034 kb on + strandat 1533.090 kb on - strand, within yddEat 1533.090 kb on - strand, within yddEat 1533.171 kb on + strand, within yddEat 1533.171 kb on + strand, within yddEat 1533.174 kb on - strand, within yddEat 1533.177 kb on + strand, within yddEat 1533.195 kb on + strand, within yddEat 1533.195 kb on + strand, within yddEat 1533.288 kb on - strand, within yddEat 1533.377 kb on - strand, within yddEat 1533.377 kb on - strand, within yddEat 1533.643 kb on - strand, within yddEat 1533.650 kb on + strand, within yddEat 1533.735 kb on + strand, within yddEat 1533.892 kb on + strandat 1533.947 kb on - strandat 1534.325 kb on - strand, within narVat 1534.336 kb on + strand, within narVat 1534.625 kb on + strandat 1534.659 kb on + strandat 1534.659 kb on + strandat 1534.776 kb on + strand, within narW

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Time1hr
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1,532,030 - +0.1
1,532,030 - -1.1
1,532,151 - nhoA b1463 0.12 +0.4
1,532,151 - nhoA b1463 0.12 +0.6
1,532,151 - nhoA b1463 0.12 +0.2
1,532,159 + nhoA b1463 0.13 -0.1
1,532,159 + nhoA b1463 0.13 +0.4
1,532,497 - nhoA b1463 0.53 +0.3
1,532,497 - nhoA b1463 0.53 -0.0
1,532,501 + nhoA b1463 0.54 -0.3
1,532,501 + nhoA b1463 0.54 +0.1
1,532,517 - nhoA b1463 0.55 +0.4
1,532,530 - nhoA b1463 0.57 -0.8
1,532,595 + nhoA b1463 0.65 +0.3
1,532,688 + nhoA b1463 0.76 -1.0
1,532,696 - nhoA b1463 0.77 -0.6
1,532,746 + nhoA b1463 0.83 -0.3
1,532,785 - nhoA b1463 0.87 +0.2
1,532,834 - -0.1
1,532,950 + -0.2
1,533,034 + -0.2
1,533,090 - yddE b1464 0.11 -0.8
1,533,090 - yddE b1464 0.11 -0.1
1,533,171 + yddE b1464 0.20 -2.1
1,533,171 + yddE b1464 0.20 -1.1
1,533,174 - yddE b1464 0.21 -0.4
1,533,177 + yddE b1464 0.21 -0.5
1,533,195 + yddE b1464 0.23 +1.4
1,533,195 + yddE b1464 0.23 -0.1
1,533,288 - yddE b1464 0.33 +0.4
1,533,377 - yddE b1464 0.43 -0.5
1,533,377 - yddE b1464 0.43 -0.7
1,533,643 - yddE b1464 0.73 -0.0
1,533,650 + yddE b1464 0.74 -0.2
1,533,735 + yddE b1464 0.83 -0.4
1,533,892 + -0.3
1,533,947 - -0.3
1,534,325 - narV b1465 0.53 -0.3
1,534,336 + narV b1465 0.55 +0.3
1,534,625 + +0.1
1,534,659 + -0.2
1,534,659 + -0.9
1,534,776 + narW b1466 0.20 -0.5

Or see this region's nucleotide sequence