Experiment: LB + carbenicillin Time7hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybiR and ybiS are separated by 58 nucleotides ybiS and ybiT are separated by 218 nucleotides
b0818: ybiR - predicted transporter (NCBI), at 852,870 to 853,988
ybiR
b0819: ybiS - hypothetical protein (NCBI), at 854,047 to 854,967
ybiS
b0820: ybiT - fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI), at 855,186 to 856,778
ybiT
Position (kb) 854
855 Strain fitness (log2 ratio) -1
0
1 at 853.057 kb on + strand, within ybiR at 853.057 kb on + strand, within ybiR at 853.175 kb on + strand, within ybiR at 853.175 kb on + strand, within ybiR at 853.183 kb on - strand, within ybiR at 853.259 kb on + strand, within ybiR at 853.285 kb on - strand, within ybiR at 853.329 kb on - strand, within ybiR at 853.329 kb on - strand, within ybiR at 853.372 kb on + strand, within ybiR at 853.397 kb on - strand, within ybiR at 853.428 kb on + strand, within ybiR at 853.428 kb on + strand, within ybiR at 853.476 kb on + strand, within ybiR at 853.481 kb on - strand, within ybiR at 853.595 kb on - strand, within ybiR at 853.597 kb on + strand, within ybiR at 853.605 kb on - strand, within ybiR at 853.605 kb on - strand, within ybiR at 853.668 kb on + strand, within ybiR at 853.668 kb on + strand, within ybiR at 853.690 kb on + strand, within ybiR at 853.697 kb on - strand, within ybiR at 853.743 kb on - strand, within ybiR at 853.756 kb on - strand, within ybiR at 853.789 kb on - strand, within ybiR at 853.808 kb on + strand, within ybiR at 853.874 kb on + strand, within ybiR at 853.902 kb on - strand at 853.934 kb on + strand at 853.966 kb on + strand at 854.017 kb on - strand at 854.138 kb on - strand at 854.138 kb on - strand at 854.212 kb on - strand, within ybiS at 854.264 kb on + strand, within ybiS at 854.264 kb on + strand, within ybiS at 854.285 kb on - strand, within ybiS at 854.290 kb on - strand, within ybiS at 854.391 kb on - strand, within ybiS at 854.405 kb on + strand, within ybiS at 854.405 kb on + strand, within ybiS at 854.415 kb on + strand, within ybiS at 854.422 kb on - strand, within ybiS at 854.565 kb on + strand, within ybiS at 854.565 kb on + strand, within ybiS at 854.612 kb on + strand, within ybiS at 854.646 kb on + strand, within ybiS at 854.678 kb on - strand, within ybiS at 854.689 kb on - strand, within ybiS at 854.705 kb on + strand, within ybiS at 854.718 kb on - strand, within ybiS at 854.718 kb on - strand, within ybiS at 854.718 kb on - strand, within ybiS at 854.718 kb on - strand, within ybiS at 854.819 kb on + strand, within ybiS at 854.900 kb on - strand at 854.900 kb on - strand at 854.909 kb on - strand at 854.909 kb on - strand at 854.911 kb on + strand at 854.911 kb on + strand at 855.074 kb on - strand at 855.101 kb on - strand at 855.107 kb on + strand at 855.353 kb on - strand, within ybiT at 855.382 kb on + strand, within ybiT at 855.382 kb on + strand, within ybiT at 855.390 kb on - strand, within ybiT at 855.390 kb on - strand, within ybiT at 855.580 kb on - strand, within ybiT at 855.624 kb on - strand, within ybiT at 855.754 kb on - strand, within ybiT at 855.810 kb on + strand, within ybiT at 855.837 kb on + strand, within ybiT at 855.878 kb on - strand, within ybiT at 855.908 kb on - strand, within ybiT
Per-strain Table
Position Strand Gene LocusTag Fraction LB + carbenicillin Time7hr remove 853,057 + ybiR b0818 0.17 +0.4 853,057 + ybiR b0818 0.17 -0.5 853,175 + ybiR b0818 0.27 +0.6 853,175 + ybiR b0818 0.27 +0.2 853,183 - ybiR b0818 0.28 -0.1 853,259 + ybiR b0818 0.35 +0.2 853,285 - ybiR b0818 0.37 -0.0 853,329 - ybiR b0818 0.41 -0.8 853,329 - ybiR b0818 0.41 +1.2 853,372 + ybiR b0818 0.45 +0.2 853,397 - ybiR b0818 0.47 -0.1 853,428 + ybiR b0818 0.50 +1.1 853,428 + ybiR b0818 0.50 +0.3 853,476 + ybiR b0818 0.54 +0.3 853,481 - ybiR b0818 0.55 +0.9 853,595 - ybiR b0818 0.65 +0.4 853,597 + ybiR b0818 0.65 -0.3 853,605 - ybiR b0818 0.66 +0.2 853,605 - ybiR b0818 0.66 +0.2 853,668 + ybiR b0818 0.71 -0.1 853,668 + ybiR b0818 0.71 +0.4 853,690 + ybiR b0818 0.73 -0.2 853,697 - ybiR b0818 0.74 +0.1 853,743 - ybiR b0818 0.78 +1.0 853,756 - ybiR b0818 0.79 +0.4 853,789 - ybiR b0818 0.82 +0.3 853,808 + ybiR b0818 0.84 -0.4 853,874 + ybiR b0818 0.90 -0.1 853,902 - -0.1 853,934 + -0.2 853,966 + +0.2 854,017 - -0.4 854,138 - -0.5 854,138 - +0.2 854,212 - ybiS b0819 0.18 +0.1 854,264 + ybiS b0819 0.24 -0.2 854,264 + ybiS b0819 0.24 +0.8 854,285 - ybiS b0819 0.26 +0.1 854,290 - ybiS b0819 0.26 +0.6 854,391 - ybiS b0819 0.37 +0.4 854,405 + ybiS b0819 0.39 +0.2 854,405 + ybiS b0819 0.39 -0.4 854,415 + ybiS b0819 0.40 -0.2 854,422 - ybiS b0819 0.41 +0.0 854,565 + ybiS b0819 0.56 +1.0 854,565 + ybiS b0819 0.56 +0.3 854,612 + ybiS b0819 0.61 +0.8 854,646 + ybiS b0819 0.65 +0.8 854,678 - ybiS b0819 0.69 +0.2 854,689 - ybiS b0819 0.70 +0.2 854,705 + ybiS b0819 0.71 +0.6 854,718 - ybiS b0819 0.73 +0.5 854,718 - ybiS b0819 0.73 +0.2 854,718 - ybiS b0819 0.73 +0.6 854,718 - ybiS b0819 0.73 +0.5 854,819 + ybiS b0819 0.84 +0.3 854,900 - +0.3 854,900 - +0.5 854,909 - +0.1 854,909 - +0.2 854,911 + +0.5 854,911 + +0.2 855,074 - +0.2 855,101 - +0.1 855,107 + +0.0 855,353 - ybiT b0820 0.10 -0.2 855,382 + ybiT b0820 0.12 +0.5 855,382 + ybiT b0820 0.12 +0.3 855,390 - ybiT b0820 0.13 +0.5 855,390 - ybiT b0820 0.13 +0.3 855,580 - ybiT b0820 0.25 +1.0 855,624 - ybiT b0820 0.27 -0.1 855,754 - ybiT b0820 0.36 +0.0 855,810 + ybiT b0820 0.39 +0.7 855,837 + ybiT b0820 0.41 +0.5 855,878 - ybiT b0820 0.43 +0.6 855,908 - ybiT b0820 0.45 -0.1
Or see this region's nucleotide sequence