Experiment: LB + carbenicillin Time7hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt intD and xisD overlap by 121 nucleotides xisD and ybcC are separated by 18 nucleotides ybcC and peaD overlap by 1 nucleotides peaD and renD overlap by 4 nucleotides renD and insE are separated by 65 nucleotides insE and insF-3 overlap by 4 nucleotides
b0537: intD - DLP12 prophage; predicted integrase (NCBI), at 564,038 to 565,201
intD
b4633: xisD - no description, at 565,081 to 565,302
xisD
b0539: ybcC - DLP12 prophage; predicted exonuclease (RefSeq), at 565,321 to 565,599
ybcC
b4508: peaD - putative sensory transduction regulator (VIMSS), at 565,599 to 565,910
peaD
b0542: renD - orf, hypothetical protein (VIMSS), at 565,907 to 565,999
renD
b0540: insE - IS3 element protein InsE (RefSeq), at 566,065 to 566,364
insE
b0541: insF-3 - DLP12 prophage; IS3 element protein InsF (NCBI), at 566,361 to 567,227
insF-3
Position (kb) 565
566 Strain fitness (log2 ratio) -1
0
1 at 564.921 kb on - strand, within intD at 564.927 kb on - strand, within intD at 564.927 kb on - strand, within intD at 564.927 kb on - strand, within intD at 564.950 kb on - strand, within intD at 565.014 kb on - strand, within intD at 565.014 kb on - strand, within intD at 565.014 kb on - strand, within intD at 565.045 kb on - strand, within intD at 565.074 kb on + strand, within intD at 565.075 kb on - strand, within intD at 565.157 kb on - strand at 565.157 kb on - strand at 565.167 kb on - strand at 565.232 kb on - strand, within xisD at 565.241 kb on + strand, within xisD at 565.244 kb on + strand, within xisD at 565.246 kb on + strand, within xisD at 565.254 kb on - strand, within xisD at 565.254 kb on - strand, within xisD at 565.264 kb on - strand, within xisD at 565.271 kb on + strand, within xisD at 565.271 kb on + strand, within xisD at 565.440 kb on + strand, within ybcC at 565.473 kb on + strand, within ybcC at 565.473 kb on + strand, within ybcC at 565.481 kb on - strand, within ybcC at 565.482 kb on + strand, within ybcC at 565.482 kb on + strand, within ybcC at 565.512 kb on + strand, within ybcC at 565.517 kb on + strand, within ybcC at 565.625 kb on + strand at 565.757 kb on - strand, within peaD at 565.841 kb on - strand, within peaD at 565.910 kb on - strand at 565.967 kb on - strand, within renD at 565.967 kb on - strand, within renD at 565.969 kb on - strand, within renD at 565.969 kb on - strand, within renD
Per-strain Table
Position Strand Gene LocusTag Fraction LB + carbenicillin Time7hr remove 564,921 - intD b0537 0.76 +0.3 564,927 - intD b0537 0.76 +0.1 564,927 - intD b0537 0.76 +0.3 564,927 - intD b0537 0.76 +0.1 564,950 - intD b0537 0.78 +0.5 565,014 - intD b0537 0.84 +0.1 565,014 - intD b0537 0.84 +0.1 565,014 - intD b0537 0.84 +0.2 565,045 - intD b0537 0.87 -0.1 565,074 + intD b0537 0.89 -0.4 565,075 - intD b0537 0.89 -0.1 565,157 - +1.2 565,157 - +0.9 565,167 - +0.2 565,232 - xisD b4633 0.68 +0.1 565,241 + xisD b4633 0.72 +0.2 565,244 + xisD b4633 0.73 +0.2 565,246 + xisD b4633 0.74 +0.2 565,254 - xisD b4633 0.78 +0.2 565,254 - xisD b4633 0.78 -0.9 565,264 - xisD b4633 0.82 +0.4 565,271 + xisD b4633 0.86 +0.0 565,271 + xisD b4633 0.86 +0.0 565,440 + ybcC b0539 0.43 -0.0 565,473 + ybcC b0539 0.54 -0.3 565,473 + ybcC b0539 0.54 +0.2 565,481 - ybcC b0539 0.57 +0.3 565,482 + ybcC b0539 0.58 +0.3 565,482 + ybcC b0539 0.58 +0.4 565,512 + ybcC b0539 0.68 +0.1 565,517 + ybcC b0539 0.70 +0.1 565,625 + +0.3 565,757 - peaD b4508 0.51 +0.1 565,841 - peaD b4508 0.78 +0.1 565,910 - +0.6 565,967 - renD b0542 0.65 +0.0 565,967 - renD b0542 0.65 +0.7 565,969 - renD b0542 0.67 +0.8 565,969 - renD b0542 0.67 +0.5
Or see this region's nucleotide sequence