Strain Fitness in Escherichia coli BW25113 around b3128

Experiment: LB + ciprofloxacin Time4hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB + ciprofloxacin Time4hr
3,272,312	+	garP	b3127	0.54	-0.3
3,272,312	+	garP	b3127	0.54	+0.1
3,272,345	-	garP	b3127	0.56	-0.3
3,272,357	-	garP	b3127	0.57	+0.3
3,272,383	-	garP	b3127	0.59	+0.1
3,272,385	-	garP	b3127	0.59	+0.2
3,272,385	-	garP	b3127	0.59	-0.4
3,272,639	+	garP	b3127	0.78	+0.2
3,272,639	+	garP	b3127	0.78	-0.1
3,272,639	+	garP	b3127	0.78	-0.2
3,272,648	-	garP	b3127	0.79	+0.6
3,272,731	+	garP	b3127	0.85	+0.6
3,272,741	+	garP	b3127	0.86	+0.3
3,272,763	+	garP	b3127	0.87	+1.0
3,272,775	+	garP	b3127	0.88	+0.8
3,272,811	+				+1.5
3,272,811	+				+0.5
3,272,811	+				+0.1
3,272,811	+				-0.2
3,272,811	+				+0.6
3,272,821	+				+0.1
3,272,847	-				+1.0
3,272,872	+				+0.1
3,272,872	+				-0.1
3,273,117	-				+1.0
3,273,118	-				+0.5
3,273,118	-				+1.0
3,273,168	-				-0.6
3,273,178	-				+0.5
3,273,187	-				-1.3
3,273,187	-				-0.9
3,273,189	+				+1.1
3,273,189	+				+0.2
3,273,189	+				+0.6
3,273,280	+				+1.0
3,273,288	-				+0.4
3,273,325	+				+1.0
3,273,331	-				+1.0
3,273,400	-				-0.0
3,273,451	+				-0.0
3,273,474	+	garD	b3128	0.11	+2.2
3,273,474	-	garD	b3128	0.11	-0.2
3,273,480	-	garD	b3128	0.11	+0.1
3,273,480	-	garD	b3128	0.11	-0.2
3,273,480	-	garD	b3128	0.11	-0.1
3,273,480	-	garD	b3128	0.11	+0.2
3,273,482	-	garD	b3128	0.11	+0.6
3,273,509	+	garD	b3128	0.13	+0.0
3,273,509	+	garD	b3128	0.13	+0.7
3,273,532	-	garD	b3128	0.15	+0.6
3,273,536	-	garD	b3128	0.15	-0.5
3,273,536	-	garD	b3128	0.15	+0.5
3,273,590	-	garD	b3128	0.18	-0.0
3,273,595	+	garD	b3128	0.19	-0.1
3,273,617	-	garD	b3128	0.20	+0.5
3,273,672	+	garD	b3128	0.23	+0.4
3,273,672	+	garD	b3128	0.23	+0.3
3,273,672	+	garD	b3128	0.23	-0.3
3,273,672	+	garD	b3128	0.23	+0.3
3,273,719	+	garD	b3128	0.26	+0.1
3,273,719	-	garD	b3128	0.26	+0.1
3,273,725	-	garD	b3128	0.27	+0.5
3,273,727	-	garD	b3128	0.27	+0.0
3,273,734	-	garD	b3128	0.27	-0.2
3,273,742	+	garD	b3128	0.28	-0.0
3,273,755	+	garD	b3128	0.29	+0.0
3,273,755	+	garD	b3128	0.29	+0.2
3,273,756	-	garD	b3128	0.29	-0.5
3,273,820	-	garD	b3128	0.33	+0.3
3,273,844	-	garD	b3128	0.34	+0.4
3,273,844	-	garD	b3128	0.34	+0.1
3,273,884	-	garD	b3128	0.37	+0.0
3,273,885	-	garD	b3128	0.37	-0.1
3,273,937	+	garD	b3128	0.40	-1.0
3,273,960	+	garD	b3128	0.42	+0.3
3,273,999	-	garD	b3128	0.44	+0.4
3,273,999	-	garD	b3128	0.44	-0.6
3,274,131	-	garD	b3128	0.53	-0.5
3,274,152	-	garD	b3128	0.54	-0.1
3,274,162	-	garD	b3128	0.55	+0.3
3,274,168	+	garD	b3128	0.55	+0.3
3,274,168	+	garD	b3128	0.55	+0.8
3,274,172	-	garD	b3128	0.55	+0.3
3,274,468	-	garD	b3128	0.74	+0.0
3,274,508	-	garD	b3128	0.77	+0.3
3,274,541	-	garD	b3128	0.79	+0.3
3,274,571	+	garD	b3128	0.81	-0.2
3,274,619	+	garD	b3128	0.84	+0.2
3,274,623	+	garD	b3128	0.84	+0.4
3,274,709	+	garD	b3128	0.89	-0.0
3,274,836	-				+0.1
3,275,046	+				-0.5
3,275,046	+				-0.6
3,275,049	-				+0.5
3,275,049	-				+0.2
3,275,049	-				-0.2
3,275,051	+				+0.4
3,275,051	+				-0.5
3,275,057	-				+0.1
3,275,059	-	sohA	b3129	0.10	+0.5
3,275,063	+	sohA	b3129	0.12	+0.5
3,275,098	+	sohA	b3129	0.22	+0.2
3,275,108	+	sohA	b3129	0.25	-0.2
3,275,108	+	sohA	b3129	0.25	+0.5
3,275,118	+	sohA	b3129	0.28	-0.4
3,275,118	+	sohA	b3129	0.28	+0.0
3,275,318	-	sohA	b3129	0.88	-0.5
3,275,318	-	sohA	b3129	0.88	+0.5
3,275,392	+				+0.1
3,275,392	+				-0.1
3,275,392	+				+0.1
3,275,400	-				+0.4
3,275,400	-				-0.0
3,275,420	-	yhaV	b3130	0.13	+0.0
3,275,427	+	yhaV	b3130	0.15	-0.7
3,275,451	+	yhaV	b3130	0.20	+0.3
3,275,512	+	yhaV	b3130	0.33	-0.3
3,275,536	+	yhaV	b3130	0.38	-0.0
3,275,596	+	yhaV	b3130	0.51	+0.2
3,275,642	-	yhaV	b3130	0.61	-0.3
3,275,642	-	yhaV	b3130	0.61	+0.5
3,275,678	+	yhaV	b3130	0.69	+0.5
3,275,685	-	yhaV	b3130	0.70	-0.1
3,275,685	-	yhaV	b3130	0.70	+0.6
3,275,686	-	yhaV	b3130	0.70	+0.7
3,275,686	-	yhaV	b3130	0.70	+0.0
3,275,690	-	yhaV	b3130	0.71	-0.2
3,275,735	+	yhaV	b3130	0.81	+0.2
3,275,741	-	yhaV	b3130	0.82	+0.0
3,275,781	-				-0.4
3,275,781	-				-0.6