Strain Fitness in Escherichia coli BW25113 around b1669

Experiment: LB + ciprofloxacin Time1-2hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydhS and ydhT are separated by 11 nucleotidesydhT and ydhU are separated by 3 nucleotidesydhU and ydhX overlap by 4 nucleotides b1668: ydhS - conserved protein with FAD/NAD(P)-binding domain (NCBI), at 1,745,155 to 1,746,759 ydhS b1669: ydhT - hypothetical protein (NCBI), at 1,746,771 to 1,747,583 ydhT b1670: ydhU - predicted cytochrome (NCBI), at 1,747,587 to 1,748,372 ydhU b1671: ydhX - predicted 4Fe-4S ferridoxin-type protein (RefSeq), at 1,748,369 to 1,749,037 ydhX Position (kb) 1746 1747 1748Strain fitness (log2 ratio) -1 0 1at 1745.934 kb on + strand, within ydhSat 1746.064 kb on + strand, within ydhSat 1746.072 kb on - strand, within ydhSat 1746.072 kb on - strand, within ydhSat 1746.195 kb on + strand, within ydhSat 1746.347 kb on + strand, within ydhSat 1746.526 kb on - strand, within ydhSat 1746.854 kb on - strand, within ydhTat 1746.877 kb on + strand, within ydhTat 1746.969 kb on + strand, within ydhTat 1747.895 kb on - strand, within ydhUat 1747.958 kb on - strand, within ydhUat 1747.958 kb on - strand, within ydhUat 1747.965 kb on - strand, within ydhUat 1748.076 kb on - strand, within ydhUat 1748.231 kb on - strand, within ydhUat 1748.231 kb on - strand, within ydhU

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Per-strain Table

Position Strand Gene LocusTag Fraction LB + ciprofloxacin Time1-2hr
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1,745,934 + ydhS b1668 0.49 -0.3
1,746,064 + ydhS b1668 0.57 +0.1
1,746,072 - ydhS b1668 0.57 +0.5
1,746,072 - ydhS b1668 0.57 -0.2
1,746,195 + ydhS b1668 0.65 -0.3
1,746,347 + ydhS b1668 0.74 -0.5
1,746,526 - ydhS b1668 0.85 -0.2
1,746,854 - ydhT b1669 0.10 +0.4
1,746,877 + ydhT b1669 0.13 +0.5
1,746,969 + ydhT b1669 0.24 +0.3
1,747,895 - ydhU b1670 0.39 -0.1
1,747,958 - ydhU b1670 0.47 +0.5
1,747,958 - ydhU b1670 0.47 +0.0
1,747,965 - ydhU b1670 0.48 +0.7
1,748,076 - ydhU b1670 0.62 -0.0
1,748,231 - ydhU b1670 0.82 -0.6
1,748,231 - ydhU b1670 0.82 -0.5

Or see this region's nucleotide sequence