Strain Fitness in Pseudomonas putida KT2440 around PP_5742

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,279,683	+		PP_1117	0.75	-2.4
1,279,719	-		PP_1117	0.78	-1.8
1,279,747	+		PP_1117	0.80	+1.0
1,279,963	-				-0.5
1,280,192	-				+0.4
1,280,255	-				+0.8
1,280,256	+				-1.0
1,280,256	+				-1.3
1,280,259	+				+1.0
1,280,260	-				+2.6
1,280,260	-				-1.5
1,280,260	-				-2.3
1,280,311	-				-1.1
1,280,311	-				+1.3
1,280,333	-				+1.4
1,280,372	-				+1.3
1,280,431	-				+1.1
1,280,464	-				-0.8
1,280,491	-				+0.6
1,280,543	-				+0.1
1,280,626	-				-0.2
1,280,645	+				+1.6
1,280,676	+		PP_5742	0.13	+0.8
1,280,684	+		PP_5742	0.14	+1.6
1,280,916	-		PP_5742	0.55	+1.0
1,280,936	+		PP_5742	0.58	-0.4
1,280,947	-		PP_5742	0.60	+2.1
1,280,975	-		PP_5742	0.65	+0.5
1,280,976	+		PP_5742	0.65	+0.8
1,281,021	-		PP_5742	0.73	+1.6
1,281,045	-		PP_5742	0.77	+0.1
1,281,073	-		PP_5742	0.82	+0.7
1,281,206	+				+2.1
1,281,340	+				-2.4
1,281,340	+				-0.8
1,281,341	-				-0.3
1,281,345	-				+0.1
1,281,345	-				-2.0
1,281,353	+				-0.2
1,281,354	-				+2.6
1,281,395	+		PP_1118	0.11	+1.5
1,281,396	-		PP_1118	0.11	+1.1
1,281,461	+		PP_1118	0.14	-1.8
1,281,461	+		PP_1118	0.14	+0.8
1,281,477	+		PP_1118	0.15	+2.4
1,281,478	-		PP_1118	0.15	+0.6
1,281,519	+		PP_1118	0.18	-0.6
1,281,661	+		PP_1118	0.26	+0.8
1,281,661	+		PP_1118	0.26	+1.0
1,281,748	+		PP_1118	0.31	+0.4
1,281,748	+		PP_1118	0.31	-0.4
1,281,748	+		PP_1118	0.31	+1.0
1,281,749	-		PP_1118	0.31	+0.6
1,281,749	-		PP_1118	0.31	+0.5
1,281,749	-		PP_1118	0.31	+1.6
1,281,760	+		PP_1118	0.32	-0.3
1,281,761	-		PP_1118	0.32	+0.9
1,281,761	-		PP_1118	0.32	+0.4
1,281,803	-		PP_1118	0.35	+0.4
1,281,816	+		PP_1118	0.35	+1.7
1,281,816	+		PP_1118	0.35	+2.1
1,281,817	-		PP_1118	0.35	+0.8
1,281,817	-		PP_1118	0.35	-0.7
1,281,817	-		PP_1118	0.35	+1.8
1,281,817	-		PP_1118	0.35	+1.3
1,281,820	+		PP_1118	0.36	-0.5
1,281,820	+		PP_1118	0.36	+1.9
1,281,820	+		PP_1118	0.36	-1.5
1,281,820	+		PP_1118	0.36	-1.5
1,281,820	+		PP_1118	0.36	-1.3
1,281,820	+		PP_1118	0.36	-1.0
1,281,820	+		PP_1118	0.36	+0.5
1,281,820	+		PP_1118	0.36	-0.1
1,281,821	-		PP_1118	0.36	+0.2
1,281,821	-		PP_1118	0.36	-2.3
1,281,832	+		PP_1118	0.36	+1.7
1,281,832	+		PP_1118	0.36	-1.0
1,281,832	+		PP_1118	0.36	+0.0
1,281,833	-		PP_1118	0.36	+2.0
1,281,833	-		PP_1118	0.36	+0.1
1,281,833	-		PP_1118	0.36	+0.3
1,281,914	+		PP_1118	0.41	+0.8
1,281,914	+		PP_1118	0.41	+1.0
1,281,914	+		PP_1118	0.41	-1.0
1,281,914	+		PP_1118	0.41	-0.6
1,281,914	+		PP_1118	0.41	+0.8
1,281,917	+		PP_1118	0.41	+0.6
1,281,917	+		PP_1118	0.41	-1.8
1,281,917	+		PP_1118	0.41	-1.3
1,281,918	-		PP_1118	0.41	+1.4
1,281,921	+		PP_1118	0.42	-1.0
1,281,922	-		PP_1118	0.42	+0.3
1,281,922	-		PP_1118	0.42	+0.3
1,281,923	-		PP_1118	0.42	+1.4
1,282,055	-		PP_1118	0.50	-0.8
1,282,058	+		PP_1118	0.50	+0.6
1,282,058	+		PP_1118	0.50	-0.1
1,282,058	+		PP_1118	0.50	-1.8
1,282,091	+		PP_1118	0.52	+0.0
1,282,091	+		PP_1118	0.52	+1.9
1,282,092	-		PP_1118	0.52	+1.1
1,282,092	-		PP_1118	0.52	-1.1
1,282,138	+		PP_1118	0.54	+0.8
1,282,138	+		PP_1118	0.54	-1.0
1,282,138	+		PP_1118	0.54	-3.1
1,282,138	+		PP_1118	0.54	+3.0
1,282,138	+		PP_1118	0.54	-0.6
1,282,138	+		PP_1118	0.54	-0.5
1,282,138	+		PP_1118	0.54	+2.7
1,282,138	+		PP_1118	0.54	+0.6
1,282,139	-		PP_1118	0.54	-0.4
1,282,139	-		PP_1118	0.54	+1.7
1,282,139	-		PP_1118	0.54	-1.2
1,282,139	-		PP_1118	0.54	+0.8
1,282,139	-		PP_1118	0.54	+0.6
1,282,151	+		PP_1118	0.55	-0.5
1,282,152	-		PP_1118	0.55	+0.2