Strain Fitness in Pseudomonas putida KT2440 around PP_5728

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
6,014,854	+		PP_5266	0.51	+0.6
6,014,854	+		PP_5266	0.51	-0.9
6,014,855	-		PP_5266	0.51	-0.9
6,014,855	-		PP_5266	0.51	-0.3
6,015,178	+		PP_5266	0.68	+0.4
6,015,178	+		PP_5266	0.68	-2.4
6,015,179	-		PP_5266	0.68	+1.5
6,015,179	-		PP_5266	0.68	+0.2
6,015,359	+		PP_5266	0.78	-3.3
6,015,359	+		PP_5266	0.78	+0.9
6,015,359	+		PP_5266	0.78	-0.9
6,015,360	-		PP_5266	0.78	-0.7
6,015,360	-		PP_5266	0.78	-1.2
6,015,379	+		PP_5266	0.79	-0.6
6,015,379	+		PP_5266	0.79	-3.1
6,015,380	-		PP_5266	0.79	-1.2
6,015,380	-		PP_5266	0.79	-3.8
6,015,380	-		PP_5266	0.79	+0.2
6,015,461	+		PP_5266	0.84	+1.3
6,015,461	+		PP_5266	0.84	-0.9
6,015,461	+		PP_5266	0.84	-1.0
6,015,499	+		PP_5266	0.86	+0.7
6,015,514	+		PP_5266	0.87	+0.2
6,015,602	+				-0.3
6,015,603	-				+1.1
6,015,603	-				-0.3
6,015,604	+				+0.9
6,015,604	+				-1.7
6,015,604	+				+1.3
6,015,604	+				-0.1
6,015,605	-				-2.7
6,015,605	-				+0.7
6,015,605	-				+0.4
6,015,605	-				+0.6
6,015,605	-				-0.0
6,015,605	-				+0.1
6,015,605	-				-2.8
6,015,647	-				+0.6
6,015,698	+				+0.1
6,015,854	+				-2.2
6,015,854	+				-3.4
6,015,855	-				-1.5
6,015,855	-				-1.5
6,015,855	-				-0.2
6,015,872	-				-0.9
6,015,887	+				+0.5
6,015,958	-		PP_5728	0.14	-0.3
6,015,958	-		PP_5728	0.14	+0.6
6,015,970	+		PP_5728	0.15	-1.3
6,016,099	+		PP_5728	0.30	-3.1
6,016,132	+		PP_5728	0.34	+0.9
6,016,133	-		PP_5728	0.35	-1.7
6,016,170	-		PP_5728	0.39	+0.3
6,016,174	-		PP_5728	0.39	-1.8
6,016,231	+				+0.6
6,016,231	+		PP_5728	0.46	+0.3
6,016,231	+		PP_5728	0.46	-3.5
6,016,232	-		PP_5728	0.46	-1.0
6,016,232	-		PP_5728	0.46	-1.1
6,016,301	-		PP_5728	0.54	+1.5
6,016,398	-		PP_5728	0.66	-0.3
6,016,404	+		PP_5728	0.67	-1.4
6,016,404	+		PP_5728	0.67	-2.3
6,016,405	-		PP_5728	0.67	-0.3
6,016,410	+		PP_5728	0.67	-0.9
6,016,411	-		PP_5728	0.67	+0.6
6,016,457	-		PP_5728	0.73	-0.2
6,016,459	+		PP_5728	0.73	+0.3
6,016,480	+		PP_5728	0.76	-2.9
6,016,505	+		PP_5728	0.79	+0.3
6,016,509	+		PP_5728	0.79	-1.2
6,016,509	+		PP_5728	0.79	-1.7
6,016,510	-		PP_5728	0.79	-0.7
6,016,510	-		PP_5728	0.79	-2.3
6,016,510	-		PP_5728	0.79	+1.4
6,016,543	+		PP_5728	0.83	-1.6
6,016,575	+		PP_5728	0.87	-0.7
6,016,576	-		PP_5728	0.87	-0.5
6,016,582	-		PP_5728	0.88	-2.3
6,016,670	-				-0.0
6,016,688	+				-1.5
6,016,739	-				-1.2
6,016,809	+				-0.7
6,016,907	+				-2.7
6,016,997	+		PP_5267	0.20	+2.2
6,017,003	+		PP_5267	0.22	-2.5
6,017,004	-		PP_5267	0.22	-0.9
6,017,081	+		PP_5267	0.40	-0.4
6,017,292	+				-2.2
6,017,354	+				-2.9
6,017,395	-				-0.5
6,017,558	+		PP_5268	0.16	-0.9
6,017,558	+		PP_5268	0.16	-1.0
6,017,558	+		PP_5268	0.16	+0.6
6,017,559	-		PP_5268	0.16	-3.1
6,017,559	-		PP_5268	0.16	+0.2
6,017,559	-		PP_5268	0.16	-2.2
6,017,561	+		PP_5268	0.17	+0.6
6,017,561	+		PP_5268	0.17	-0.6
6,017,562	-		PP_5268	0.17	-0.7
6,017,562	-		PP_5268	0.17	+0.1
6,017,562	-		PP_5268	0.17	-0.7
6,017,562	-		PP_5268	0.17	-0.5