Strain Fitness in Pseudomonas putida KT2440 around PP_5686

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,048,789	-		PP_4451	0.48	-0.6
5,049,003	-		PP_4451	0.67	-1.0
5,049,237	-		PP_4451	0.89	-0.2
5,049,579	+				+0.9
5,049,666	-				-4.5
5,049,674	+				-1.9
5,049,771	-				+0.0
5,050,092	-		PP_5686	0.49	+1.0
5,050,097	-		PP_5686	0.50	+1.7
5,050,114	-		PP_5686	0.53	+1.4
5,050,288	-		PP_5686	0.80	+1.0
5,050,288	-		PP_5686	0.80	+1.1
5,050,516	-		PP_5687	0.16	+2.5
5,050,533	+		PP_5687	0.18	+1.7
5,050,696	-		PP_5687	0.43	-0.3
5,050,785	+		PP_5687	0.57	+1.5
5,050,786	-		PP_5687	0.57	+1.6
5,050,786	-		PP_5687	0.57	+1.2
5,050,840	+		PP_5687	0.66	+0.4
5,050,840	+		PP_5687	0.66	+0.1
5,050,938	+		PP_5687	0.81	+0.4
5,050,973	-		PP_5687	0.86	+0.4
5,050,986	+		PP_5687	0.88	+0.2
5,051,034	+				-0.0
5,051,066	-				-0.8
5,051,160	+				+0.9
5,051,170	+				+0.6
5,051,304	-				+1.5
5,051,305	+				+1.0
5,051,365	+				+1.8