Strain Fitness in Pseudomonas putida KT2440 around PP_5683

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,045,834	+		PP_5682	0.51	+0.1
5,045,835	-		PP_5682	0.52	-1.5
5,045,835	-		PP_5682	0.52	-1.7
5,045,860	-		PP_5682	0.64	-1.2
5,045,866	+		PP_5682	0.67	+1.1
5,045,866	+		PP_5682	0.67	+0.7
5,045,867	-		PP_5682	0.67	+1.5
5,045,867	-		PP_5682	0.67	-0.6
5,045,867	-		PP_5682	0.67	+0.5
5,045,889	+		PP_5682	0.78	+1.3
5,045,890	-		PP_5682	0.78	-1.0
5,045,890	-		PP_5682	0.78	+1.3
5,045,890	-		PP_5682	0.78	+0.4
5,045,910	-		PP_5682	0.88	-2.8
5,045,996	+				+0.6
5,045,997	-				+0.1
5,046,004	-				-0.3
5,046,018	+				+1.6
5,046,019	-				+0.7
5,046,019	-				+0.3
5,046,019	-				+0.9
5,046,019	-				+0.1
5,046,019	-				+0.2
5,046,038	-				+0.1
5,046,053	+				-0.5
5,046,053	+				+0.6
5,046,054	-				-0.9
5,046,175	-		PP_4450	0.21	+0.4
5,046,292	+		PP_4450	0.40	-0.3
5,046,292	+		PP_4450	0.40	+1.1
5,046,293	-		PP_4450	0.40	+0.5
5,046,293	-		PP_4450	0.40	-0.5
5,046,293	-		PP_4450	0.40	+0.8
5,046,355	+		PP_4450	0.50	+0.1
5,046,356	-		PP_4450	0.50	+0.4
5,046,356	-		PP_4450	0.50	-2.7
5,046,356	-		PP_4450	0.50	+0.1
5,046,420	-		PP_4450	0.60	+0.1
5,046,471	+		PP_4450	0.68	+0.2
5,046,471	+		PP_4450	0.68	+0.3
5,046,472	-		PP_4450	0.68	-1.5
5,046,555	+		PP_4450	0.82	-2.5
5,046,555	+		PP_4450	0.82	+1.7
5,046,556	-		PP_4450	0.82	+0.5
5,046,556	-		PP_4450	0.82	-0.1
5,046,556	-		PP_4450	0.82	-1.1
5,046,574	+		PP_4450	0.85	-1.5
5,046,574	+		PP_4450	0.85	+0.7
5,046,574	+		PP_4450	0.85	+0.2
5,046,613	+				+0.7
5,046,613	+				+1.1
5,046,617	+				-0.9
5,046,618	-				+2.0
5,046,618	-				+0.7
5,046,664	+				+1.4
5,046,664	+				-0.2
5,046,675	+				+1.3
5,046,676	-				-0.3
5,046,676	-				+0.5
5,046,676	-				+2.7
5,046,686	+				-2.9
5,046,686	+				-2.0
5,046,719	-				+1.8
5,046,752	-				+1.5
5,046,759	+				+2.2
5,046,760	-				+3.9
5,046,760	-				-0.7
5,046,760	-				-0.5
5,046,760	-				+0.6
5,046,819	+		PP_5683	0.15	+0.8
5,046,820	-		PP_5683	0.16	+0.1
5,046,820	-		PP_5683	0.16	-0.1
5,046,820	-		PP_5683	0.16	+1.2
5,046,857	+		PP_5683	0.31	-1.5
5,046,857	+		PP_5683	0.31	+1.0
5,046,867	+		PP_5683	0.35	+0.4
5,046,867	+		PP_5683	0.35	+1.2
5,046,891	+		PP_5683	0.46	-2.1
5,046,970	+		PP_5683	0.79	+0.6
5,046,970	+		PP_5683	0.79	+0.9
5,046,970	+		PP_5683	0.79	+1.1
5,046,970	+		PP_5683	0.79	-0.2
5,046,970	+		PP_5683	0.79	+1.6
5,046,970	+		PP_5683	0.79	+2.3
5,046,970	+		PP_5683	0.79	-0.1
5,046,970	+		PP_5683	0.79	+1.2
5,046,971	-		PP_5683	0.79	+0.2
5,046,971	-		PP_5683	0.79	-0.1
5,046,971	-		PP_5683	0.79	+1.7
5,046,971	-		PP_5683	0.79	-0.3
5,046,974	+				-0.7
5,046,974	+		PP_5683	0.81	-1.2
5,046,974	+		PP_5683	0.81	+1.5
5,046,974	+		PP_5683	0.81	+0.8
5,046,975	-		PP_5683	0.81	+2.8
5,046,975	-		PP_5683	0.81	+0.8
5,047,017	+				+1.5
5,047,017	+				-1.6
5,047,018	-				+1.6
5,047,018	-				-0.3
5,047,018	-				-0.6
5,047,139	-				+0.7
5,047,169	+				+0.7
5,047,169	+				+1.0
5,047,169	+				+2.0
5,047,170	-				+0.5
5,047,170	-				-0.2
5,047,223	+				+0.9
5,047,223	+				-2.1
5,047,223	+				+0.1
5,047,223	+				+1.2
5,047,223	+				+1.5
5,047,224	-				+0.2
5,047,224	-				-0.7
5,047,224	-				+1.1
5,047,224	-				+0.6
5,047,224	-				+0.4
5,047,253	+				+0.4
5,047,357	+				+0.9
5,047,357	+				+2.1
5,047,358	-				+1.2
5,047,358	-				+1.6
5,047,414	+				+0.8
5,047,433	+				+2.6
5,047,433	+				+0.8
5,047,433	+				+0.5
5,047,433	+				+1.3
5,047,433	+				-0.3
5,047,433	+				+0.7
5,047,434	-				-0.2
5,047,434	-				+1.1
5,047,434	-				+1.9
5,047,434	-				+0.4
5,047,434	-				+0.1
5,047,434	-				+0.4
5,047,510	+		PP_5684	0.20	+1.2
5,047,510	+		PP_5684	0.20	-0.7
5,047,511	-		PP_5684	0.21	-0.5
5,047,511	-		PP_5684	0.21	+0.3
5,047,518	+		PP_5684	0.24	-0.3
5,047,518	+		PP_5684	0.24	+1.6
5,047,519	-		PP_5684	0.24	+0.9
5,047,630	+				+1.4
5,047,630	+		PP_5684	0.77	+0.3
5,047,630	+		PP_5684	0.77	+1.9
5,047,630	+		PP_5684	0.77	+2.2
5,047,631	-		PP_5684	0.77	+0.5
5,047,631	-		PP_5684	0.77	+1.5
5,047,631	-		PP_5684	0.77	+0.3
5,047,631	-				+3.1
5,047,631	-		PP_5684	0.77	+0.5
5,047,789	-		PP_5685	0.43	+1.4
5,047,814	+		PP_5685	0.53	+0.8
5,047,814	+		PP_5685	0.53	+1.2
5,047,815	-		PP_5685	0.53	+1.5
5,047,815	-		PP_5685	0.53	+2.5
5,047,825	-		PP_5685	0.57	-0.2
5,047,825	-		PP_5685	0.57	+1.2
5,047,844	+		PP_5685	0.65	+0.2
5,047,845	-		PP_5685	0.65	+0.8
5,047,868	+		PP_5685	0.75	+1.2
5,047,880	+		PP_5685	0.80	+0.8
5,047,880	+		PP_5685	0.80	+0.7
5,047,881	-		PP_5685	0.80	+0.4
5,047,893	+		PP_5685	0.85	+0.9
5,047,893	+		PP_5685	0.85	+1.2
5,047,922	+				+0.8
5,047,923	-				+0.6
5,047,946	+				-1.6
5,047,985	+				+0.8
5,047,986	-				-0.1
5,047,986	-				+0.4
5,047,986	-				+0.5
5,047,986	-				-0.8
5,047,986	-				+1.8
5,047,986	-				+1.9
5,047,986	-				-0.5
5,047,986	-				+1.7
5,047,987	+				+0.9
5,047,987	+				+1.2
5,047,987	+				+1.9
5,047,987	+				+1.0
5,047,988	-				+1.0
5,047,988	-				+1.4
5,047,988	-				+0.3
5,047,988	-				+1.6
5,047,988	-				+0.8
5,047,988	-				+1.6