Strain Fitness in Pseudomonas putida KT2440 around PP_5676

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,011,025	-		PP_4415	0.49	+1.0
5,011,054	+		PP_4415	0.51	-0.3
5,011,104	+		PP_4415	0.56	-0.7
5,011,105	-		PP_4415	0.56	+1.1
5,011,108	+		PP_4415	0.56	-0.1
5,011,196	+		PP_4415	0.64	-0.2
5,011,197	-				+1.1
5,011,197	-		PP_4415	0.64	-1.4
5,011,459	+		PP_4415	0.88	+0.7
5,011,459	+		PP_4415	0.88	-0.3
5,011,460	-		PP_4415	0.88	+0.7
5,011,524	-				-1.8
5,011,524	-				+0.5
5,011,719	-		PP_5675	0.12	+1.1
5,011,773	+		PP_5675	0.36	+2.6
5,011,774	-		PP_5675	0.36	-2.5
5,011,832	+		PP_5675	0.62	+1.6
5,011,833	-		PP_5675	0.62	+1.2
5,011,849	+		PP_5675	0.69	+0.7
5,011,850	-		PP_5675	0.70	-1.5
5,011,897	-				+1.2
5,011,903	+				+0.3
5,011,903	+				+0.1
5,011,904	-				+0.4
5,011,904	-				+0.8
5,011,904	-				+0.6
5,011,915	+				-0.0
5,011,915	+				+0.3
5,011,916	-				+1.7
5,011,943	-				+1.0
5,011,950	+				+0.7
5,011,950	+				-2.3
5,011,952	+				+1.3
5,011,952	+				+0.8
5,011,952	+				+0.4
5,011,952	+				-0.8
5,011,953	-				+2.6
5,011,953	-				+1.6
5,011,953	-				+0.4
5,011,953	-				+0.5
5,011,953	-				+0.6
5,011,953	-				+0.5
5,011,953	-				-1.0
5,011,953	-				-2.1
5,012,008	+				-0.7
5,012,129	-		PP_5676	0.30	+0.0
5,012,129	-				+0.1
5,012,167	-		PP_5676	0.40	+1.1
5,012,168	+		PP_5676	0.40	+0.9
5,012,168	+		PP_5676	0.40	+0.1
5,012,169	-		PP_5676	0.40	+0.3
5,012,169	-		PP_5676	0.40	+1.5
5,012,169	-		PP_5676	0.40	+0.4
5,012,169	-		PP_5676	0.40	-0.7
5,012,169	-		PP_5676	0.40	+1.4
5,012,182	-		PP_5676	0.44	-0.5
5,012,218	-		PP_5676	0.52	-2.4
5,012,304	+		PP_5676	0.74	-2.3
5,012,313	+		PP_5676	0.76	-1.4
5,012,313	+		PP_5676	0.76	+0.6
5,012,313	+		PP_5676	0.76	+2.5
5,012,313	+		PP_5676	0.76	+1.0
5,012,313	+		PP_5676	0.76	+0.7
5,012,313	+		PP_5676	0.76	+1.5
5,012,313	+		PP_5676	0.76	+1.8
5,012,313	+		PP_5676	0.76	+0.6
5,012,313	+		PP_5676	0.76	+0.3
5,012,313	+		PP_5676	0.76	+0.1
5,012,355	+		PP_5676	0.87	+0.8
5,012,355	+		PP_5676	0.87	+1.6
5,012,355	+		PP_5676	0.87	+2.8
5,012,638	+				-2.7
5,012,639	-				-0.6
5,012,639	-				+0.0
5,012,639	-				+0.1
5,012,639	-				+2.4
5,012,783	-				-2.4
5,012,783	-				+0.5
5,012,833	+				+2.7
5,012,873	+				+1.3
5,012,969	+				-0.0
5,012,969	+				+1.3
5,012,970	-				+0.9
5,012,970	-				+1.4
5,013,106	+				+2.1
5,013,106	+				+0.5
5,013,106	+				+1.0
5,013,106	+				+0.3
5,013,107	-				+0.3
5,013,107	-				+0.1
5,013,107	-				+0.6
5,013,107	-				+2.5
5,013,167	+				+0.9
5,013,330	+		PP_5678	0.52	+0.6
5,013,330	+		PP_5678	0.52	+1.4
5,013,331	-		PP_5678	0.52	+1.2
5,013,331	-		PP_5678	0.52	+0.1
5,013,380	-		PP_5678	0.69	-0.3
5,013,404	+		PP_5678	0.77	-0.3