Strain Fitness in Pseudomonas putida KT2440 around PP_5664

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,798,691	+				+1.4
4,798,691	+				+2.1
4,798,711	-				-2.6
4,798,721	+				-2.0
4,798,721	+				+0.0
4,798,721	+				-0.1
4,798,845	+				-2.7
4,799,014	-		PP_4226	0.23	-1.9
4,799,083	+		PP_4226	0.37	-2.5
4,799,084	-		PP_4226	0.37	-2.7
4,799,084	-		PP_4226	0.37	-2.4
4,799,084	-		PP_4226	0.37	+0.5
4,799,115	-		PP_4226	0.44	+2.4
4,799,425	+				+2.2
4,799,426	-				-0.4
4,799,426	-				-1.6
4,799,471	+		PP_5664	0.11	+0.3
4,799,471	+		PP_5664	0.11	+1.4
4,799,472	-		PP_5664	0.12	+1.2
4,799,472	-		PP_5664	0.12	+2.1
4,799,476	+		PP_5664	0.12	-3.1
4,799,477	-		PP_5664	0.12	+0.1
4,799,477	-		PP_5664	0.12	-2.5
4,799,517	+		PP_5664	0.19	+1.2
4,799,557	+		PP_5664	0.25	-1.1
4,799,636	+		PP_5664	0.38	-3.2
4,799,636	+		PP_5664	0.38	-0.2
4,799,641	-		PP_5664	0.39	-2.2
4,799,677	-		PP_5664	0.45	+0.4
4,799,797	+		PP_5664	0.64	-0.0
4,799,884	-		PP_5664	0.78	-0.2
4,799,962	+				-1.7
4,799,963	-				-2.2
4,799,963	-				-1.6
4,799,968	+				-3.6
4,799,968	+				-0.9
4,800,024	+		PP_4227	0.12	+0.6
4,800,025	-		PP_4227	0.12	+0.4
4,800,392	+				-0.3
4,800,468	+				+0.7
4,800,506	+				+1.0
4,800,528	+				-2.4
4,800,530	+				+1.7
4,800,530	+				+2.7
4,800,531	-				-2.3
4,800,580	+		PP_4228	0.14	-0.3
4,800,605	+		PP_4228	0.18	-1.5
4,800,654	-		PP_4228	0.26	-1.0
4,800,680	-		PP_4228	0.30	-0.5
4,800,829	+		PP_4228	0.54	-2.9
4,800,979	+		PP_4228	0.78	-1.6
4,800,979	+		PP_4228	0.78	-1.0
4,800,979	+		PP_4228	0.78	+1.0