Strain Fitness in Pseudomonas putida KT2440 around PP_5635

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,363,617	-		PP_3839	0.69	+1.5
4,363,718	+		PP_3839	0.79	+0.6
4,363,718	+		PP_3839	0.79	-3.4
4,363,718	+				+0.5
4,363,766	-		PP_3839	0.84	+0.6
4,363,769	+		PP_3839	0.84	+0.3
4,363,769	+		PP_3839	0.84	+1.5
4,363,769	+		PP_3839	0.84	-1.5
4,363,769	+		PP_3839	0.84	+0.5
4,363,769	+		PP_3839	0.84	-0.3
4,363,770	-		PP_3839	0.85	+0.8
4,363,909	+				+1.0
4,363,909	+				-0.1
4,363,965	+				+1.1
4,363,965	+				+0.8
4,363,966	-				+0.9
4,363,966	-				+0.4
4,363,987	+				-0.7
4,363,996	+				+1.1
4,363,996	+				+1.1
4,363,996	+				+1.4
4,363,996	+				+0.4
4,363,996	+				-0.5
4,363,997	-				-1.1
4,363,997	-				-2.1
4,363,997	-				-0.2
4,364,047	-		PP_3840	0.21	-0.6
4,364,216	-				-2.6
4,364,216	-				-0.1
4,364,216	-				+1.9
4,364,216	-				-0.6
4,364,232	-				+0.2
4,364,232	-				-0.3
4,364,255	+				+0.9
4,364,255	+				+1.1
4,364,256	-				-1.8
4,364,485	+				-1.4
4,364,485	+				+1.1
4,364,485	+				+1.0
4,364,486	-				-2.5
4,364,486	-				-0.1
4,364,486	-				+0.3
4,364,499	+				+1.7
4,364,499	+				+0.3
4,364,499	+				-1.7
4,364,499	+				+1.7
4,364,500	-				+1.0
4,364,500	-				+1.4
4,364,611	+		PP_5635	0.47	+1.8
4,364,658	+		PP_5635	0.67	-2.2
4,364,658	+		PP_5635	0.67	+1.3
4,364,658	+		PP_5635	0.67	+1.5
4,364,659	-		PP_5635	0.67	-1.9
4,364,659	-		PP_5635	0.67	+0.7
4,364,662	+		PP_5635	0.68	-1.1
4,364,662	+		PP_5635	0.68	-2.6
4,364,662	+		PP_5635	0.68	-0.8
4,364,662	+		PP_5635	0.68	+0.4
4,364,662	+		PP_5635	0.68	+0.5
4,364,663	-		PP_5635	0.69	+2.3
4,364,663	-		PP_5635	0.69	+1.3
4,364,663	-		PP_5635	0.69	-2.7
4,364,663	-		PP_5635	0.69	+0.3
4,364,663	-		PP_5635	0.69	+1.4
4,364,663	-		PP_5635	0.69	+1.5
4,364,663	-		PP_5635	0.69	-0.7
4,364,706	+		PP_5635	0.87	+0.1
4,364,777	+				+1.3
4,364,777	+				-1.8
4,364,778	-				+0.2
4,364,795	-				+0.5
4,364,795	-				+1.4
4,364,916	+		PP_3841	0.40	-0.2
4,364,942	+		PP_3841	0.47	-0.4
4,364,942	+		PP_3841	0.47	-0.1
4,364,943	-		PP_3841	0.47	-2.6
4,364,943	-		PP_3841	0.47	+0.8
4,364,993	+		PP_3841	0.60	-1.6
4,364,994	-		PP_3841	0.61	-0.2
4,365,027	+		PP_3841	0.70	-3.1
4,365,037	-		PP_3841	0.72	-0.4
4,365,081	+		PP_3841	0.84	-2.0
4,365,081	+		PP_3841	0.84	-0.3
4,365,082	-		PP_3841	0.84	-1.3
4,365,095	-		PP_3841	0.88	+0.4
4,365,095	-		PP_3841	0.88	-1.0
4,365,095	-		PP_3841	0.88	+0.5
4,365,095	-		PP_3841	0.88	+1.2
4,365,143	-				+1.3
4,365,171	-				-0.9
4,365,171	-				+1.0
4,365,171	-				-0.0
4,365,349	-		PP_3842	0.12	-0.4
4,365,374	+		PP_3842	0.15	+0.9
4,365,374	+		PP_3842	0.15	+1.8
4,365,374	+		PP_3842	0.15	+1.1
4,365,374	+				+0.5
4,365,374	+		PP_3842	0.15	-0.5
4,365,374	+		PP_3842	0.15	+0.7
4,365,374	+		PP_3842	0.15	+1.3
4,365,375	-		PP_3842	0.15	+0.9
4,365,375	-		PP_3842	0.15	-1.1
4,365,375	-		PP_3842	0.15	+1.6
4,365,375	-		PP_3842	0.15	-0.2
4,365,375	-		PP_3842	0.15	-3.3
4,365,375	-		PP_3842	0.15	+0.8
4,365,375	-		PP_3842	0.15	-1.1
4,365,376	+				+0.5
4,365,376	+		PP_3842	0.15	+0.5
4,365,376	+				+0.5
4,365,376	+		PP_3842	0.15	-2.7
4,365,377	-		PP_3842	0.15	+1.0
4,365,377	-		PP_3842	0.15	+0.1
4,365,377	-		PP_3842	0.15	-0.5
4,365,377	-		PP_3842	0.15	+0.6
4,365,377	-		PP_3842	0.15	+0.5
4,365,398	-		PP_3842	0.17	+0.7
4,365,585	+		PP_3842	0.34	+0.8
4,365,637	+		PP_3842	0.39	-1.1
4,365,638	-		PP_3842	0.39	+1.7
4,365,638	-		PP_3842	0.39	+1.0
4,365,674	+		PP_3842	0.42	-0.5
4,365,685	-				+1.5
4,365,734	+		PP_3842	0.48	-1.2
4,365,736	+		PP_3842	0.48	-0.2
4,365,736	+		PP_3842	0.48	+2.0
4,365,736	+		PP_3842	0.48	-2.4
4,365,736	+		PP_3842	0.48	+0.7