Strain Fitness in Pseudomonas putida KT2440 around PP_5614

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,192,044	+		PP_5613	0.38	+1.3
4,192,044	+		PP_5613	0.38	-2.1
4,192,067	+		PP_5613	0.42	+1.2
4,192,067	+		PP_5613	0.42	+0.2
4,192,101	+		PP_5613	0.48	-0.0
4,192,115	+		PP_5613	0.51	+1.6
4,192,211	+		PP_5613	0.68	+0.1
4,192,212	-		PP_5613	0.68	+0.1
4,192,322	-		PP_5613	0.87	+1.7
4,192,344	+				-2.4
4,192,408	+				-2.0
4,192,425	+				-0.0
4,192,431	+				-0.9
4,192,451	+				-3.3
4,192,451	+				+0.3
4,192,451	+				+2.4
4,192,452	-				-0.6
4,192,514	+				-1.8
4,192,515	-				-2.4
4,192,544	+				-1.2
4,192,545	-				-2.8
4,192,584	-				-2.2
4,192,671	+				+1.5
4,192,704	+				+0.0
4,192,832	+				+0.4
4,192,832	+				+0.5
4,192,832	+				-0.4
4,192,833	-				-1.0
4,192,833	-				+0.5
4,192,833	-				+2.2
4,192,833	-				+1.3
4,192,856	+				+1.1
4,192,857	-				+1.9
4,192,875	+				+1.1
4,192,875	+				+3.1
4,192,876	-				+1.0
4,192,882	-				+1.5
4,192,882	-				-2.1
4,192,907	-				+0.4
4,192,925	+				+2.0
4,192,926	-				-0.4
4,192,995	+				+0.9
4,192,995	+				+3.4
4,192,995	+				+0.6
4,192,995	+				+1.1
4,193,010	+				-0.1
4,193,010	+				+0.7
4,193,112	+		PP_5614	0.15	+1.4
4,193,112	+		PP_5614	0.15	+0.6
4,193,113	-		PP_5614	0.15	+0.5
4,193,152	+		PP_5614	0.24	+0.5
4,193,153	-		PP_5614	0.24	-1.1
4,193,159	+		PP_5614	0.25	+0.8
4,193,223	+		PP_5614	0.39	-0.8
4,193,224	-		PP_5614	0.40	+1.6
4,193,224	-		PP_5614	0.40	+0.7
4,193,224	-		PP_5614	0.40	-0.1
4,193,274	-		PP_5614	0.51	-2.0
4,193,336	+		PP_5614	0.64	+1.4
4,193,336	+		PP_5614	0.64	+0.5
4,193,336	+		PP_5614	0.64	-0.2
4,193,336	+		PP_5614	0.64	+0.6
4,193,336	+		PP_5614	0.64	+1.9
4,193,336	+		PP_5614	0.64	+0.3
4,193,336	+		PP_5614	0.64	+1.2
4,193,336	+		PP_5614	0.64	+1.1
4,193,336	+		PP_5614	0.64	+0.4
4,193,336	+		PP_5614	0.64	+1.0
4,193,336	+		PP_5614	0.64	+0.7
4,193,336	+		PP_5614	0.64	+1.1
4,193,337	-		PP_5614	0.64	+0.7
4,193,337	-		PP_5614	0.64	-0.8
4,193,337	-		PP_5614	0.64	+0.0
4,193,337	-		PP_5614	0.64	+2.1
4,193,337	-		PP_5614	0.64	+0.2
4,193,337	-		PP_5614	0.64	-0.3
4,193,337	-		PP_5614	0.64	-0.8
4,193,337	-		PP_5614	0.64	-2.0
4,193,337	-		PP_5614	0.64	+0.2
4,193,337	-		PP_5614	0.64	+0.6
4,193,337	-		PP_5614	0.64	+0.3
4,193,337	-		PP_5614	0.64	+2.1
4,193,343	+		PP_5614	0.66	+0.7
4,193,344	-		PP_5614	0.66	+0.8
4,193,344	-		PP_5614	0.66	-3.4
4,193,344	-				+1.5
4,193,503	+				-1.8
4,193,515	+				+0.5
4,193,515	+				+0.7
4,193,515	+				+0.5
4,193,515	+				-0.6
4,193,515	+				+0.0
4,193,515	+				+0.0
4,193,515	+				+0.2
4,193,515	+				+0.5
4,193,515	+				-3.5
4,193,515	+				-0.1
4,193,516	-				+2.0
4,193,516	-				+0.0
4,193,516	-				+1.0
4,193,516	-				+0.1
4,193,516	-				-0.8
4,193,516	-				+1.2
4,193,517	+				+1.4
4,193,539	+				+1.1
4,193,539	+				+1.9
4,193,540	-				+2.4
4,193,606	+				+1.0
4,193,606	+				+1.9
4,193,607	-				+0.9
4,193,636	+				+2.2
4,193,637	-				-1.8
4,193,637	-				+0.8
4,193,685	+				+1.5
4,193,685	+		PP_5615	0.12	+0.0
4,193,685	+		PP_5615	0.12	-0.5
4,193,686	-		PP_5615	0.12	-1.8
4,193,686	-		PP_5615	0.12	-0.8
4,193,703	+		PP_5615	0.18	+0.1
4,193,703	+		PP_5615	0.18	+0.9
4,193,703	+		PP_5615	0.18	+1.3
4,193,703	+		PP_5615	0.18	+1.2
4,193,703	+		PP_5615	0.18	+0.1
4,193,703	+		PP_5615	0.18	+0.5
4,193,704	-		PP_5615	0.18	+0.9
4,193,754	+		PP_5615	0.34	-1.6
4,193,755	-		PP_5615	0.34	+0.0
4,193,776	+		PP_5615	0.41	-1.8
4,193,776	+		PP_5615	0.41	-1.8
4,193,776	+		PP_5615	0.41	+0.9
4,193,776	+		PP_5615	0.41	-0.4
4,193,777	-		PP_5615	0.41	+0.0
4,193,777	-		PP_5615	0.41	+1.2
4,193,777	-		PP_5615	0.41	-1.3
4,193,777	-		PP_5615	0.41	+0.9
4,193,777	-		PP_5615	0.41	+0.5
4,193,844	-		PP_5615	0.63	+0.5
4,193,905	+		PP_5615	0.82	+0.6
4,193,933	+				+1.5
4,193,934	-				+1.3
4,193,934	-				-1.5
4,193,958	-				-0.4
4,194,054	+				+1.6
4,194,054	+				+0.9
4,194,054	+				+0.7
4,194,054	+				-1.8
4,194,055	-				+0.6
4,194,055	-				+1.8
4,194,115	+				+1.7
4,194,139	+				+0.3
4,194,150	-				-0.7
4,194,150	-				+1.4
4,194,242	+		PP_5616	0.23	-0.2
4,194,256	+		PP_5616	0.27	-2.7
4,194,257	-		PP_5616	0.27	-0.6
4,194,310	+		PP_5616	0.40	+0.8
4,194,312	+		PP_5616	0.40	+0.4
4,194,312	+		PP_5616	0.40	-0.7
4,194,312	+		PP_5616	0.40	+1.1
4,194,313	-		PP_5616	0.41	+0.5
4,194,313	-		PP_5616	0.41	+1.7
4,194,313	-		PP_5616	0.41	-0.1
4,194,332	+		PP_5616	0.45	+1.3
4,194,457	+		PP_5616	0.76	+1.6
4,194,457	+		PP_5616	0.76	+1.6
4,194,457	+		PP_5616	0.76	-0.9
4,194,457	+		PP_5616	0.76	-1.3
4,194,457	+		PP_5616	0.76	+0.7